Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 ALG1L8P-201ENST00000533887 760 ntBASIC20.93■□□□□ 0.94
CCDC88AQ3V6T2 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC20.93■□□□□ 0.94
CCDC88AQ3V6T2 AL662799.1-202ENST00000614205 422 ntBASIC20.93■□□□□ 0.94
CCDC88AQ3V6T2 PODN-203ENST00000395871 2744 ntTSL 5 BASIC20.93■□□□□ 0.94
CCDC88AQ3V6T2 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC20.93■□□□□ 0.94
CCDC88AQ3V6T2 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
CCDC88AQ3V6T2 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC20.93■□□□□ 0.94
CCDC88AQ3V6T2 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC88AQ3V6T2 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC20.93■□□□□ 0.94
CCDC88AQ3V6T2 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC88AQ3V6T2 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC88AQ3V6T2 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC20.92■□□□□ 0.94
CCDC88AQ3V6T2 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC20.92■□□□□ 0.94
CCDC88AQ3V6T2 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC88AQ3V6T2 AC022144.1-201ENST00000602255 1580 ntBASIC20.92■□□□□ 0.94
CCDC88AQ3V6T2 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC20.92■□□□□ 0.94
CCDC88AQ3V6T2 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC20.92■□□□□ 0.94
CCDC88AQ3V6T2 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC88AQ3V6T2 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
CCDC88AQ3V6T2 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC20.92■□□□□ 0.94
CCDC88AQ3V6T2 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC20.92■□□□□ 0.94
CCDC88AQ3V6T2 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC88AQ3V6T2 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC88AQ3V6T2 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC88AQ3V6T2 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC20.92■□□□□ 0.94
CCDC88AQ3V6T2 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC88AQ3V6T2 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC88AQ3V6T2 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
CCDC88AQ3V6T2 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC88AQ3V6T2 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC88AQ3V6T2 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC88AQ3V6T2 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC20.92■□□□□ 0.94
CCDC88AQ3V6T2 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC88AQ3V6T2 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
CCDC88AQ3V6T2 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC20.92■□□□□ 0.94
CCDC88AQ3V6T2 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC88AQ3V6T2 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC88AQ3V6T2 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC88AQ3V6T2 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC88AQ3V6T2 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC88AQ3V6T2 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC88AQ3V6T2 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC88AQ3V6T2 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC20.91■□□□□ 0.94
CCDC88AQ3V6T2 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC20.91■□□□□ 0.94
CCDC88AQ3V6T2 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC88AQ3V6T2 LYSMD4-203ENST00000378904 2122 ntBASIC20.91■□□□□ 0.94
CCDC88AQ3V6T2 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC88AQ3V6T2 FAM185BP-201ENST00000443595 716 ntBASIC20.91■□□□□ 0.94
CCDC88AQ3V6T2 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC20.91■□□□□ 0.94
CCDC88AQ3V6T2 AC084121.4-201ENST00000641598 221 ntBASIC20.91■□□□□ 0.94
CCDC88AQ3V6T2 AF228730.8-201ENST00000642140 221 ntBASIC20.91■□□□□ 0.94
CCDC88AQ3V6T2 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC88AQ3V6T2 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
CCDC88AQ3V6T2 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC88AQ3V6T2 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC20.91■□□□□ 0.94
CCDC88AQ3V6T2 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC20.91■□□□□ 0.94
CCDC88AQ3V6T2 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
CCDC88AQ3V6T2 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC20.9■□□□□ 0.94
CCDC88AQ3V6T2 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC88AQ3V6T2 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC88AQ3V6T2 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC88AQ3V6T2 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC88AQ3V6T2 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC88AQ3V6T2 MIR1909-201ENST00000411312 80 ntBASIC20.9■□□□□ 0.94
CCDC88AQ3V6T2 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC88AQ3V6T2 AC009118.2-201ENST00000613275 655 ntBASIC20.9■□□□□ 0.94
CCDC88AQ3V6T2 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC88AQ3V6T2 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC88AQ3V6T2 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC88AQ3V6T2 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC88AQ3V6T2 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC88AQ3V6T2 PKD1P6-201ENST00000343738 4769 ntBASIC20.9■□□□□ 0.94
CCDC88AQ3V6T2 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC88AQ3V6T2 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC20.9■□□□□ 0.94
CCDC88AQ3V6T2 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC88AQ3V6T2 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC88AQ3V6T2 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC20.9■□□□□ 0.94
CCDC88AQ3V6T2 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
CCDC88AQ3V6T2 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC20.9■□□□□ 0.94
CCDC88AQ3V6T2 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC20.9■□□□□ 0.94
CCDC88AQ3V6T2 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC20.9■□□□□ 0.94
CCDC88AQ3V6T2 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC20.9■□□□□ 0.94
CCDC88AQ3V6T2 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
CCDC88AQ3V6T2 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC88AQ3V6T2 AC004840.1-201ENST00000636359 365 ntBASIC20.9■□□□□ 0.94
CCDC88AQ3V6T2 AL645728.2-201ENST00000641974 660 ntBASIC20.9■□□□□ 0.94
CCDC88AQ3V6T2 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC88AQ3V6T2 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC20.89■□□□□ 0.94
CCDC88AQ3V6T2 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
CCDC88AQ3V6T2 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC20.89■□□□□ 0.94
CCDC88AQ3V6T2 AC046185.3-201ENST00000623228 1824 ntBASIC20.89■□□□□ 0.94
CCDC88AQ3V6T2 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC20.89■□□□□ 0.94
CCDC88AQ3V6T2 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CCDC88AQ3V6T2 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CCDC88AQ3V6T2 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
CCDC88AQ3V6T2 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CCDC88AQ3V6T2 NARF-206ENST00000457415 1668 ntTSL 5 BASIC20.89■□□□□ 0.93
CCDC88AQ3V6T2 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
CCDC88AQ3V6T2 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC20.89■□□□□ 0.93
CCDC88AQ3V6T2 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC20.89■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms