Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
PTPN9P43378 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
PTPN9P43378 AC012313.1-201ENST00000593393 3059 ntBASIC17.92■□□□□ 0.46
PTPN9P43378 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
PTPN9P43378 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
PTPN9P43378 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC17.92■□□□□ 0.46
PTPN9P43378 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
PTPN9P43378 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC17.92■□□□□ 0.46
PTPN9P43378 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
PTPN9P43378 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
PTPN9P43378 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC17.92■□□□□ 0.46
PTPN9P43378 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC17.92■□□□□ 0.46
PTPN9P43378 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
PTPN9P43378 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC17.92■□□□□ 0.46
PTPN9P43378 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
PTPN9P43378 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
PTPN9P43378 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC17.92■□□□□ 0.46
PTPN9P43378 AC073648.2-201ENST00000510116 352 ntBASIC17.92■□□□□ 0.46
PTPN9P43378 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC17.92■□□□□ 0.46
PTPN9P43378 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC17.92■□□□□ 0.46
PTPN9P43378 CYGB-205ENST00000590175 830 ntTSL 3 BASIC17.92■□□□□ 0.46
PTPN9P43378 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC17.92■□□□□ 0.46
PTPN9P43378 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC17.92■□□□□ 0.46
PTPN9P43378 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
PTPN9P43378 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC17.92■□□□□ 0.46
PTPN9P43378 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC17.92■□□□□ 0.46
PTPN9P43378 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
PTPN9P43378 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
PTPN9P43378 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC17.92■□□□□ 0.46
PTPN9P43378 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
PTPN9P43378 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
PTPN9P43378 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC17.91■□□□□ 0.46
PTPN9P43378 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
PTPN9P43378 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PTPN9P43378 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
PTPN9P43378 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PTPN9P43378 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
PTPN9P43378 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
PTPN9P43378 AC106820.2-201ENST00000563775 3264 ntBASIC17.91■□□□□ 0.46
PTPN9P43378 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PTPN9P43378 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
PTPN9P43378 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PTPN9P43378 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PTPN9P43378 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC17.91■□□□□ 0.46
PTPN9P43378 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
PTPN9P43378 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
PTPN9P43378 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC17.91■□□□□ 0.46
PTPN9P43378 AC079781.3-201ENST00000449110 356 ntBASIC17.91■□□□□ 0.46
PTPN9P43378 FAM197Y8-203ENST00000450145 560 ntBASIC17.91■□□□□ 0.46
PTPN9P43378 AC018712.1-201ENST00000455767 687 ntBASIC17.91■□□□□ 0.46
PTPN9P43378 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
PTPN9P43378 RNPS1P1-201ENST00000507437 918 ntBASIC17.91■□□□□ 0.46
PTPN9P43378 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
PTPN9P43378 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC17.91■□□□□ 0.46
PTPN9P43378 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC17.91■□□□□ 0.46
PTPN9P43378 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC17.91■□□□□ 0.46
PTPN9P43378 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC17.91■□□□□ 0.46
PTPN9P43378 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PTPN9P43378 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
PTPN9P43378 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC17.91■□□□□ 0.46
PTPN9P43378 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PTPN9P43378 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PTPN9P43378 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC17.91■□□□□ 0.46
PTPN9P43378 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PTPN9P43378 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PTPN9P43378 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
PTPN9P43378 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC17.9■□□□□ 0.46
PTPN9P43378 HNRNPRP1-201ENST00000453465 1695 ntBASIC17.9■□□□□ 0.46
PTPN9P43378 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC17.9■□□□□ 0.46
PTPN9P43378 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
PTPN9P43378 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
PTPN9P43378 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC17.9■□□□□ 0.46
PTPN9P43378 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
PTPN9P43378 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
PTPN9P43378 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
PTPN9P43378 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC17.9■□□□□ 0.46
PTPN9P43378 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC17.9■□□□□ 0.46
PTPN9P43378 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
PTPN9P43378 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC17.9■□□□□ 0.46
PTPN9P43378 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC17.9■□□□□ 0.46
PTPN9P43378 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
PTPN9P43378 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
PTPN9P43378 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
PTPN9P43378 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
PTPN9P43378 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC17.9■□□□□ 0.46
PTPN9P43378 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC17.9■□□□□ 0.46
PTPN9P43378 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC17.9■□□□□ 0.46
PTPN9P43378 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
PTPN9P43378 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
PTPN9P43378 AC006557.2-201ENST00000592985 1240 ntBASIC17.9■□□□□ 0.46
PTPN9P43378 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC17.9■□□□□ 0.46
PTPN9P43378 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC17.9■□□□□ 0.46
PTPN9P43378 AL031008.1-201ENST00000619963 541 ntBASIC17.9■□□□□ 0.46
PTPN9P43378 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC17.9■□□□□ 0.46
PTPN9P43378 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
PTPN9P43378 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
PTPN9P43378 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
PTPN9P43378 HR-201ENST00000312841 5351 ntTSL 5 BASIC17.9■□□□□ 0.46
PTPN9P43378 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
PTPN9P43378 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms