Protein–RNA interactions for Protein: P41273

TNFSF9, Tumor necrosis factor ligand superfamily member 9, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFSF9P41273 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.58
TNFSF9P41273 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TNFSF9P41273 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TNFSF9P41273 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TNFSF9P41273 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC18.64■□□□□ 0.57
TNFSF9P41273 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
TNFSF9P41273 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TNFSF9P41273 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TNFSF9P41273 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
TNFSF9P41273 PAWRP1-201ENST00000451083 565 ntBASIC18.64■□□□□ 0.57
TNFSF9P41273 OR7E47P-204ENST00000575924 449 ntBASIC18.64■□□□□ 0.57
TNFSF9P41273 MIR4751-201ENST00000578027 74 ntBASIC18.64■□□□□ 0.57
TNFSF9P41273 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC18.64■□□□□ 0.57
TNFSF9P41273 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
TNFSF9P41273 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC18.64■□□□□ 0.57
TNFSF9P41273 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
TNFSF9P41273 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TNFSF9P41273 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TNFSF9P41273 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
TNFSF9P41273 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
TNFSF9P41273 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
TNFSF9P41273 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TNFSF9P41273 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TNFSF9P41273 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TNFSF9P41273 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
TNFSF9P41273 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
TNFSF9P41273 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TNFSF9P41273 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
TNFSF9P41273 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC18.63■□□□□ 0.57
TNFSF9P41273 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
TNFSF9P41273 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TNFSF9P41273 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
TNFSF9P41273 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TNFSF9P41273 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC18.63■□□□□ 0.57
TNFSF9P41273 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC18.63■□□□□ 0.57
TNFSF9P41273 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC18.63■□□□□ 0.57
TNFSF9P41273 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC18.63■□□□□ 0.57
TNFSF9P41273 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC18.63■□□□□ 0.57
TNFSF9P41273 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC18.63■□□□□ 0.57
TNFSF9P41273 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
TNFSF9P41273 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TNFSF9P41273 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
TNFSF9P41273 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC18.63■□□□□ 0.57
TNFSF9P41273 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC18.63■□□□□ 0.57
TNFSF9P41273 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC18.63■□□□□ 0.57
TNFSF9P41273 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
TNFSF9P41273 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TNFSF9P41273 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
TNFSF9P41273 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC18.63■□□□□ 0.57
TNFSF9P41273 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC18.63■□□□□ 0.57
TNFSF9P41273 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TNFSF9P41273 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
TNFSF9P41273 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
TNFSF9P41273 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
TNFSF9P41273 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
TNFSF9P41273 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC18.62■□□□□ 0.57
TNFSF9P41273 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
TNFSF9P41273 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC18.62■□□□□ 0.57
TNFSF9P41273 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC18.62■□□□□ 0.57
TNFSF9P41273 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
TNFSF9P41273 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TNFSF9P41273 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TNFSF9P41273 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
TNFSF9P41273 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
TNFSF9P41273 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC18.62■□□□□ 0.57
TNFSF9P41273 CRCP-205ENST00000431089 942 ntTSL 2 BASIC18.62■□□□□ 0.57
TNFSF9P41273 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC18.62■□□□□ 0.57
TNFSF9P41273 KRT18P58-201ENST00000527480 1120 ntBASIC18.62■□□□□ 0.57
TNFSF9P41273 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
TNFSF9P41273 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC18.62■□□□□ 0.57
TNFSF9P41273 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TNFSF9P41273 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC18.62■□□□□ 0.57
TNFSF9P41273 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TNFSF9P41273 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
TNFSF9P41273 AL023806.1-201ENST00000603994 1649 ntBASIC18.62■□□□□ 0.57
TNFSF9P41273 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC18.62■□□□□ 0.57
TNFSF9P41273 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
TNFSF9P41273 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
TNFSF9P41273 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TNFSF9P41273 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TNFSF9P41273 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
TNFSF9P41273 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TNFSF9P41273 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
TNFSF9P41273 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TNFSF9P41273 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TNFSF9P41273 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
TNFSF9P41273 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TNFSF9P41273 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TNFSF9P41273 AC092053.1-201ENST00000605787 1936 ntBASIC18.61■□□□□ 0.57
TNFSF9P41273 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
TNFSF9P41273 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TNFSF9P41273 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TNFSF9P41273 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TNFSF9P41273 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC18.61■□□□□ 0.57
TNFSF9P41273 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC18.61■□□□□ 0.57
TNFSF9P41273 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
TNFSF9P41273 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TNFSF9P41273 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
TNFSF9P41273 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
TNFSF9P41273 MED15P5-201ENST00000423150 992 ntBASIC18.61■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms