Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
MSX2P35548 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
MSX2P35548 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC16.53■□□□□ 0.24
MSX2P35548 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC16.53■□□□□ 0.24
MSX2P35548 AL513523.2-202ENST00000427283 2040 ntBASIC16.53■□□□□ 0.24
MSX2P35548 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
MSX2P35548 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC16.53■□□□□ 0.24
MSX2P35548 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC16.53■□□□□ 0.24
MSX2P35548 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
MSX2P35548 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC16.52■□□□□ 0.24
MSX2P35548 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
MSX2P35548 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
MSX2P35548 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
MSX2P35548 AC105917.1-201ENST00000506637 2539 ntBASIC16.52■□□□□ 0.24
MSX2P35548 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
MSX2P35548 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC16.52■□□□□ 0.24
MSX2P35548 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
MSX2P35548 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
MSX2P35548 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC16.52■□□□□ 0.24
MSX2P35548 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC16.52■□□□□ 0.24
MSX2P35548 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
MSX2P35548 GAD2-202ENST00000376248 680 ntTSL 5 BASIC16.52■□□□□ 0.24
MSX2P35548 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC16.52■□□□□ 0.24
MSX2P35548 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
MSX2P35548 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC16.52■□□□□ 0.24
MSX2P35548 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
MSX2P35548 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC16.52■□□□□ 0.24
MSX2P35548 AP000525.1-201ENST00000608286 694 ntBASIC16.52■□□□□ 0.24
MSX2P35548 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
MSX2P35548 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
MSX2P35548 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC16.52■□□□□ 0.24
MSX2P35548 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC16.52■□□□□ 0.23
MSX2P35548 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
MSX2P35548 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC16.52■□□□□ 0.23
MSX2P35548 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
MSX2P35548 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
MSX2P35548 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
MSX2P35548 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
MSX2P35548 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC16.52■□□□□ 0.23
MSX2P35548 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.23
MSX2P35548 AMT-250ENST00000637682 1823 ntTSL 5 BASIC16.52■□□□□ 0.23
MSX2P35548 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
MSX2P35548 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC16.52■□□□□ 0.23
MSX2P35548 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.23
MSX2P35548 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
MSX2P35548 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC16.51■□□□□ 0.23
MSX2P35548 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
MSX2P35548 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC16.51■□□□□ 0.23
MSX2P35548 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
MSX2P35548 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
MSX2P35548 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC16.51■□□□□ 0.23
MSX2P35548 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC16.51■□□□□ 0.23
MSX2P35548 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
MSX2P35548 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
MSX2P35548 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
MSX2P35548 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
MSX2P35548 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
MSX2P35548 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
MSX2P35548 Telomerase-vert.1-201ENST00000363312 438 ntBASIC16.51■□□□□ 0.23
MSX2P35548 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
MSX2P35548 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
MSX2P35548 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
MSX2P35548 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
MSX2P35548 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC16.51■□□□□ 0.23
MSX2P35548 GXYLT1P6-201ENST00000456472 1187 ntBASIC16.51■□□□□ 0.23
MSX2P35548 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC16.51■□□□□ 0.23
MSX2P35548 AC112698.1-201ENST00000510299 916 ntBASIC16.51■□□□□ 0.23
MSX2P35548 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC16.51■□□□□ 0.23
MSX2P35548 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC16.51■□□□□ 0.23
MSX2P35548 TK1-205ENST00000590862 642 ntTSL 3 BASIC16.51■□□□□ 0.23
MSX2P35548 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
MSX2P35548 AC092865.7-201ENST00000641832 219 ntBASIC16.51■□□□□ 0.23
MSX2P35548 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
MSX2P35548 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC16.51■□□□□ 0.23
MSX2P35548 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
MSX2P35548 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
MSX2P35548 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
MSX2P35548 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
MSX2P35548 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
MSX2P35548 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
MSX2P35548 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC16.51■□□□□ 0.23
MSX2P35548 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC16.51■□□□□ 0.23
MSX2P35548 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC16.51■□□□□ 0.23
MSX2P35548 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC16.51■□□□□ 0.23
MSX2P35548 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
MSX2P35548 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
MSX2P35548 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
MSX2P35548 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC16.5■□□□□ 0.23
MSX2P35548 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
MSX2P35548 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
MSX2P35548 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC16.5■□□□□ 0.23
MSX2P35548 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
MSX2P35548 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
MSX2P35548 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
MSX2P35548 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
MSX2P35548 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC16.5■□□□□ 0.23
MSX2P35548 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
MSX2P35548 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC16.5■□□□□ 0.23
MSX2P35548 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
MSX2P35548 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms