Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 AC007541.1-201ENST00000570282 1469 ntBASIC17.64■□□□□ 0.41
COL9A1P20849 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
COL9A1P20849 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL9A1P20849 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
COL9A1P20849 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
COL9A1P20849 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
COL9A1P20849 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL9A1P20849 AC127070.2-201ENST00000424075 555 ntTSL 2 BASIC17.64■□□□□ 0.41
COL9A1P20849 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC17.64■□□□□ 0.41
COL9A1P20849 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
COL9A1P20849 ZNF527-203ENST00000483919 1142 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
COL9A1P20849 MBP-227ENST00000526111 581 ntTSL 4 BASIC17.64■□□□□ 0.41
COL9A1P20849 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC17.64■□□□□ 0.41
COL9A1P20849 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
COL9A1P20849 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC17.64■□□□□ 0.41
COL9A1P20849 AP003400.6-201ENST00000624698 740 ntBASIC17.64■□□□□ 0.41
COL9A1P20849 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL9A1P20849 AC022144.1-201ENST00000602255 1580 ntBASIC17.64■□□□□ 0.41
COL9A1P20849 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL9A1P20849 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL9A1P20849 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL9A1P20849 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
COL9A1P20849 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
COL9A1P20849 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL9A1P20849 AP000997.3-201ENST00000623333 2250 ntBASIC17.64■□□□□ 0.41
COL9A1P20849 AC098818.2-201ENST00000564925 2320 ntBASIC17.64■□□□□ 0.41
COL9A1P20849 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL9A1P20849 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC17.64■□□□□ 0.41
COL9A1P20849 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC17.63■□□□□ 0.41
COL9A1P20849 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
COL9A1P20849 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL9A1P20849 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL9A1P20849 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL9A1P20849 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
COL9A1P20849 AL020996.1-203ENST00000536896 2307 ntBASIC17.63■□□□□ 0.41
COL9A1P20849 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL9A1P20849 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL9A1P20849 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL9A1P20849 DYDC1-201ENST00000372202 612 ntAPPRIS P1 TSL 3 BASIC17.63■□□□□ 0.41
COL9A1P20849 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC17.63■□□□□ 0.41
COL9A1P20849 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC17.63■□□□□ 0.41
COL9A1P20849 DGCR5-201ENST00000399539 862 ntBASIC17.63■□□□□ 0.41
COL9A1P20849 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC17.63■□□□□ 0.41
COL9A1P20849 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
COL9A1P20849 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
COL9A1P20849 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC17.63■□□□□ 0.41
COL9A1P20849 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC17.63■□□□□ 0.41
COL9A1P20849 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC17.63■□□□□ 0.41
COL9A1P20849 AL805961.1-202ENST00000641562 540 ntBASIC17.63■□□□□ 0.41
COL9A1P20849 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC17.63■□□□□ 0.41
COL9A1P20849 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL9A1P20849 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
COL9A1P20849 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC17.63■□□□□ 0.41
COL9A1P20849 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
COL9A1P20849 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC17.63■□□□□ 0.41
COL9A1P20849 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC17.63■□□□□ 0.41
COL9A1P20849 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC17.63■□□□□ 0.41
COL9A1P20849 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL9A1P20849 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL9A1P20849 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
COL9A1P20849 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL9A1P20849 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL9A1P20849 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
COL9A1P20849 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL9A1P20849 AC097637.2-201ENST00000624096 1997 ntBASIC17.62■□□□□ 0.41
COL9A1P20849 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL9A1P20849 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
COL9A1P20849 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL9A1P20849 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC17.62■□□□□ 0.41
COL9A1P20849 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
COL9A1P20849 AL353779.1-201ENST00000434793 351 ntBASIC17.62■□□□□ 0.41
COL9A1P20849 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC17.62■□□□□ 0.41
COL9A1P20849 CXCL1P1-201ENST00000502804 216 ntBASIC17.62■□□□□ 0.41
COL9A1P20849 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
COL9A1P20849 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC17.62■□□□□ 0.41
COL9A1P20849 API5-211ENST00000534695 560 ntTSL 5 BASIC17.62■□□□□ 0.41
COL9A1P20849 NAT9-224ENST00000583757 583 ntTSL 3 BASIC17.62■□□□□ 0.41
COL9A1P20849 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL9A1P20849 GGTLC5P-201ENST00000617623 998 ntBASIC17.62■□□□□ 0.41
COL9A1P20849 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC17.62■□□□□ 0.41
COL9A1P20849 AL139099.5-201ENST00000635274 300 ntBASIC17.62■□□□□ 0.41
COL9A1P20849 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC17.62■□□□□ 0.41
COL9A1P20849 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL9A1P20849 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC17.62■□□□□ 0.41
COL9A1P20849 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
COL9A1P20849 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL9A1P20849 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL9A1P20849 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC17.62■□□□□ 0.41
COL9A1P20849 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC17.62■□□□□ 0.41
COL9A1P20849 AC009336.1-201ENST00000608941 1553 ntBASIC17.62■□□□□ 0.41
COL9A1P20849 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
COL9A1P20849 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL9A1P20849 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL9A1P20849 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL9A1P20849 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC17.61■□□□□ 0.41
COL9A1P20849 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
COL9A1P20849 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC17.61■□□□□ 0.41
COL9A1P20849 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
COL9A1P20849 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
COL9A1P20849 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 52.7 ms