Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 SLC25A6P5-201ENST00000435663 894 ntBASIC20.89■□□□□ 0.93
COL4A1P02462 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC20.89■□□□□ 0.93
COL4A1P02462 AQP6-203ENST00000551733 849 ntTSL 3 BASIC20.89■□□□□ 0.93
COL4A1P02462 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC20.89■□□□□ 0.93
COL4A1P02462 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
COL4A1P02462 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC20.89■□□□□ 0.93
COL4A1P02462 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
COL4A1P02462 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC20.89■□□□□ 0.93
COL4A1P02462 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
COL4A1P02462 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
COL4A1P02462 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC20.89■□□□□ 0.93
COL4A1P02462 LINC00896-202ENST00000609602 2128 ntBASIC20.89■□□□□ 0.93
COL4A1P02462 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC20.88■□□□□ 0.93
COL4A1P02462 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
COL4A1P02462 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC20.88■□□□□ 0.93
COL4A1P02462 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC20.88■□□□□ 0.93
COL4A1P02462 AC012569.1-201ENST00000591191 1524 ntBASIC20.88■□□□□ 0.93
COL4A1P02462 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
COL4A1P02462 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC20.88■□□□□ 0.93
COL4A1P02462 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL4A1P02462 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC20.88■□□□□ 0.93
COL4A1P02462 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL4A1P02462 AC092580.3-201ENST00000430932 139 ntBASIC20.88■□□□□ 0.93
COL4A1P02462 PPP6R2P1-201ENST00000450880 1275 ntBASIC20.88■□□□□ 0.93
COL4A1P02462 COX20P2-201ENST00000452636 358 ntBASIC20.88■□□□□ 0.93
COL4A1P02462 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC20.88■□□□□ 0.93
COL4A1P02462 AC069262.1-201ENST00000539058 672 ntBASIC20.88■□□□□ 0.93
COL4A1P02462 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
COL4A1P02462 TSFM-210ENST00000550559 897 ntTSL 5 BASIC20.88■□□□□ 0.93
COL4A1P02462 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC20.88■□□□□ 0.93
COL4A1P02462 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL4A1P02462 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC20.88■□□□□ 0.93
COL4A1P02462 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
COL4A1P02462 AC016027.1-202ENST00000607927 1699 ntBASIC20.88■□□□□ 0.93
COL4A1P02462 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
COL4A1P02462 FRMD8P1-201ENST00000440433 1524 ntBASIC20.87■□□□□ 0.93
COL4A1P02462 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL4A1P02462 GNE-204ENST00000539208 2190 ntTSL 2 BASIC20.87■□□□□ 0.93
COL4A1P02462 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
COL4A1P02462 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL4A1P02462 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL4A1P02462 PTMS-202ENST00000389462 773 ntTSL 2 BASIC20.87■□□□□ 0.93
COL4A1P02462 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC20.87■□□□□ 0.93
COL4A1P02462 TREML5P-201ENST00000421694 576 ntBASIC20.87■□□□□ 0.93
COL4A1P02462 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC20.87■□□□□ 0.93
COL4A1P02462 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC20.87■□□□□ 0.93
COL4A1P02462 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
COL4A1P02462 AC109635.5-201ENST00000533593 962 ntBASIC20.87■□□□□ 0.93
COL4A1P02462 GREM1-201ENST00000560677 623 ntTSL 4 BASIC20.87■□□□□ 0.93
COL4A1P02462 AC026150.2-201ENST00000564693 1156 ntBASIC20.87■□□□□ 0.93
COL4A1P02462 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC20.87■□□□□ 0.93
COL4A1P02462 AJ011932.1-201ENST00000621707 465 ntBASIC20.87■□□□□ 0.93
COL4A1P02462 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
COL4A1P02462 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
COL4A1P02462 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
COL4A1P02462 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL4A1P02462 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
COL4A1P02462 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL4A1P02462 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
COL4A1P02462 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL4A1P02462 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL4A1P02462 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL4A1P02462 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL4A1P02462 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL4A1P02462 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC20.86■□□□□ 0.93
COL4A1P02462 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL4A1P02462 AL353732.1-201ENST00000569618 1459 ntBASIC20.86■□□□□ 0.93
COL4A1P02462 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL4A1P02462 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL4A1P02462 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
COL4A1P02462 CENPM-205ENST00000404067 905 ntTSL 3 BASIC20.86■□□□□ 0.93
COL4A1P02462 RBPMS2P1-201ENST00000437762 623 ntBASIC20.86■□□□□ 0.93
COL4A1P02462 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC20.86■□□□□ 0.93
COL4A1P02462 AC025678.2-201ENST00000562061 970 ntBASIC20.86■□□□□ 0.93
COL4A1P02462 NAA60-208ENST00000570819 833 ntTSL 2 BASIC20.86■□□□□ 0.93
COL4A1P02462 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC20.86■□□□□ 0.93
COL4A1P02462 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL4A1P02462 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL4A1P02462 LINC00895-201ENST00000629028 1637 ntBASIC20.86■□□□□ 0.93
COL4A1P02462 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC20.86■□□□□ 0.93
COL4A1P02462 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
COL4A1P02462 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
COL4A1P02462 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL4A1P02462 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL4A1P02462 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC20.86■□□□□ 0.93
COL4A1P02462 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL4A1P02462 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
COL4A1P02462 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
COL4A1P02462 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
COL4A1P02462 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
COL4A1P02462 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC20.86■□□□□ 0.93
COL4A1P02462 FO538757.1-201ENST00000623083 1397 ntBASIC20.86■□□□□ 0.93
COL4A1P02462 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL4A1P02462 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
COL4A1P02462 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC20.86■□□□□ 0.93
COL4A1P02462 AC093525.9-201ENST00000624961 1746 ntBASIC20.86■□□□□ 0.93
COL4A1P02462 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL4A1P02462 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC20.86■□□□□ 0.93
COL4A1P02462 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
COL4A1P02462 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms