Protein–RNA interactions for Protein: O43353

RIPK2, Receptor-interacting serine/threonine-protein kinase 2, humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RIPK2O43353 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
RIPK2O43353 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
RIPK2O43353 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
RIPK2O43353 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
RIPK2O43353 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
RIPK2O43353 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
RIPK2O43353 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC17.57■□□□□ 0.4
RIPK2O43353 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
RIPK2O43353 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC17.57■□□□□ 0.4
RIPK2O43353 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC17.57■□□□□ 0.4
RIPK2O43353 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC17.57■□□□□ 0.4
RIPK2O43353 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
RIPK2O43353 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
RIPK2O43353 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
RIPK2O43353 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC17.57■□□□□ 0.4
RIPK2O43353 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC17.57■□□□□ 0.4
RIPK2O43353 SNORA78-201ENST00000459373 127 ntBASIC17.57■□□□□ 0.4
RIPK2O43353 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC17.57■□□□□ 0.4
RIPK2O43353 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
RIPK2O43353 AL023973.1-201ENST00000624619 620 ntBASIC17.57■□□□□ 0.4
RIPK2O43353 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC17.57■□□□□ 0.4
RIPK2O43353 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC17.57■□□□□ 0.4
RIPK2O43353 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC17.57■□□□□ 0.4
RIPK2O43353 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
RIPK2O43353 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
RIPK2O43353 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
RIPK2O43353 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
RIPK2O43353 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
RIPK2O43353 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
RIPK2O43353 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC17.57■□□□□ 0.4
RIPK2O43353 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
RIPK2O43353 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC17.57■□□□□ 0.4
RIPK2O43353 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
RIPK2O43353 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
RIPK2O43353 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RIPK2O43353 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RIPK2O43353 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
RIPK2O43353 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
RIPK2O43353 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RIPK2O43353 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RIPK2O43353 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RIPK2O43353 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RIPK2O43353 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RIPK2O43353 ENSA-206ENST00000361631 725 ntTSL 2 BASIC17.56■□□□□ 0.4
RIPK2O43353 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
RIPK2O43353 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC17.56■□□□□ 0.4
RIPK2O43353 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
RIPK2O43353 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
RIPK2O43353 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC17.56■□□□□ 0.4
RIPK2O43353 NAA38-203ENST00000575071 553 ntTSL 2 BASIC17.56■□□□□ 0.4
RIPK2O43353 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RIPK2O43353 AL138966.2-201ENST00000621997 464 ntBASIC17.56■□□□□ 0.4
RIPK2O43353 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
RIPK2O43353 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC17.56■□□□□ 0.4
RIPK2O43353 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
RIPK2O43353 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
RIPK2O43353 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RIPK2O43353 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC17.56■□□□□ 0.4
RIPK2O43353 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
RIPK2O43353 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
RIPK2O43353 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RIPK2O43353 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC17.56■□□□□ 0.4
RIPK2O43353 FRMD8P1-201ENST00000440433 1524 ntBASIC17.56■□□□□ 0.4
RIPK2O43353 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC17.56■□□□□ 0.4
RIPK2O43353 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RIPK2O43353 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RIPK2O43353 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RIPK2O43353 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC17.56■□□□□ 0.4
RIPK2O43353 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
RIPK2O43353 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RIPK2O43353 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC17.55■□□□□ 0.4
RIPK2O43353 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
RIPK2O43353 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
RIPK2O43353 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
RIPK2O43353 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
RIPK2O43353 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC17.55■□□□□ 0.4
RIPK2O43353 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RIPK2O43353 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
RIPK2O43353 CROCCP1-201ENST00000426910 5675 ntBASIC17.55■□□□□ 0.4
RIPK2O43353 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC17.55■□□□□ 0.4
RIPK2O43353 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RIPK2O43353 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RIPK2O43353 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
RIPK2O43353 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC17.55■□□□□ 0.4
RIPK2O43353 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
RIPK2O43353 AP003733.1-201ENST00000491725 852 ntBASIC17.55■□□□□ 0.4
RIPK2O43353 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC17.55■□□□□ 0.4
RIPK2O43353 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC17.55■□□□□ 0.4
RIPK2O43353 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC17.55■□□□□ 0.4
RIPK2O43353 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC17.55■□□□□ 0.4
RIPK2O43353 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC17.55■□□□□ 0.4
RIPK2O43353 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC17.55■□□□□ 0.4
RIPK2O43353 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
RIPK2O43353 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
RIPK2O43353 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RIPK2O43353 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC17.55■□□□□ 0.4
RIPK2O43353 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
RIPK2O43353 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
RIPK2O43353 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RIPK2O43353 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms