Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
SDCBPO00560 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
SDCBPO00560 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
SDCBPO00560 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
SDCBPO00560 AC116353.5-201ENST00000638148 1699 ntBASIC14.74□□□□□ -0.05
SDCBPO00560 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
SDCBPO00560 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
SDCBPO00560 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
SDCBPO00560 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC14.74□□□□□ -0.05
SDCBPO00560 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
SDCBPO00560 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC14.74□□□□□ -0.05
SDCBPO00560 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC14.74□□□□□ -0.05
SDCBPO00560 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
SDCBPO00560 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC14.74□□□□□ -0.05
SDCBPO00560 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
SDCBPO00560 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC14.74□□□□□ -0.05
SDCBPO00560 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC14.74□□□□□ -0.05
SDCBPO00560 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC14.74□□□□□ -0.05
SDCBPO00560 IGHGP-201ENST00000390555 1178 ntBASIC14.74□□□□□ -0.05
SDCBPO00560 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
SDCBPO00560 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC14.74□□□□□ -0.05
SDCBPO00560 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC14.74□□□□□ -0.05
SDCBPO00560 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC14.74□□□□□ -0.05
SDCBPO00560 AC104076.2-201ENST00000448912 469 ntBASIC14.74□□□□□ -0.05
SDCBPO00560 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC14.74□□□□□ -0.05
SDCBPO00560 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC14.74□□□□□ -0.05
SDCBPO00560 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC14.74□□□□□ -0.05
SDCBPO00560 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC14.74□□□□□ -0.05
SDCBPO00560 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC14.74□□□□□ -0.05
SDCBPO00560 RBM42-202ENST00000586618 771 ntTSL 3 BASIC14.74□□□□□ -0.05
SDCBPO00560 GPR32P1-201ENST00000601788 811 ntBASIC14.74□□□□□ -0.05
SDCBPO00560 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
SDCBPO00560 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC14.74□□□□□ -0.05
SDCBPO00560 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC14.74□□□□□ -0.05
SDCBPO00560 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
SDCBPO00560 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
SDCBPO00560 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC14.74□□□□□ -0.05
SDCBPO00560 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
SDCBPO00560 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC14.74□□□□□ -0.05
SDCBPO00560 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC14.74□□□□□ -0.05
SDCBPO00560 WT1-209ENST00000530998 2421 ntTSL 2 BASIC14.74□□□□□ -0.05
SDCBPO00560 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
SDCBPO00560 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
SDCBPO00560 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
SDCBPO00560 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
SDCBPO00560 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC14.74□□□□□ -0.05
SDCBPO00560 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
SDCBPO00560 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC14.74□□□□□ -0.05
SDCBPO00560 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
SDCBPO00560 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
SDCBPO00560 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC14.73□□□□□ -0.05
SDCBPO00560 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
SDCBPO00560 LINC02199-201ENST00000506655 2702 ntBASIC14.73□□□□□ -0.05
SDCBPO00560 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
SDCBPO00560 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC14.73□□□□□ -0.05
SDCBPO00560 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC14.73□□□□□ -0.05
SDCBPO00560 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
SDCBPO00560 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC14.73□□□□□ -0.05
SDCBPO00560 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
SDCBPO00560 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
SDCBPO00560 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
SDCBPO00560 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC14.73□□□□□ -0.05
SDCBPO00560 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC14.73□□□□□ -0.05
SDCBPO00560 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC14.73□□□□□ -0.05
SDCBPO00560 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
SDCBPO00560 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
SDCBPO00560 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
SDCBPO00560 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
SDCBPO00560 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
SDCBPO00560 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
SDCBPO00560 MIR662-201ENST00000384847 95 ntBASIC14.73□□□□□ -0.05
SDCBPO00560 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
SDCBPO00560 AC063952.2-201ENST00000498792 1227 ntBASIC14.73□□□□□ -0.05
SDCBPO00560 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC14.73□□□□□ -0.05
SDCBPO00560 VENTXP5-201ENST00000523979 775 ntBASIC14.73□□□□□ -0.05
SDCBPO00560 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC14.73□□□□□ -0.05
SDCBPO00560 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC14.73□□□□□ -0.05
SDCBPO00560 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC14.73□□□□□ -0.05
SDCBPO00560 RN7SL850P-201ENST00000579959 291 ntBASIC14.73□□□□□ -0.05
SDCBPO00560 GXYLT1P4-201ENST00000613576 1192 ntBASIC14.73□□□□□ -0.05
SDCBPO00560 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC14.73□□□□□ -0.05
SDCBPO00560 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC14.73□□□□□ -0.05
SDCBPO00560 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
SDCBPO00560 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
SDCBPO00560 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
SDCBPO00560 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
SDCBPO00560 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
SDCBPO00560 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC14.73□□□□□ -0.05
SDCBPO00560 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
SDCBPO00560 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC14.73□□□□□ -0.05
SDCBPO00560 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC14.73□□□□□ -0.05
SDCBPO00560 AC046185.3-201ENST00000623228 1824 ntBASIC14.73□□□□□ -0.05
SDCBPO00560 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
SDCBPO00560 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
SDCBPO00560 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
SDCBPO00560 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
SDCBPO00560 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC14.73□□□□□ -0.05
SDCBPO00560 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
SDCBPO00560 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC14.73□□□□□ -0.05
SDCBPO00560 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms