Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC16.65■□□□□ 0.26
SLC28A1O00337 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC16.65■□□□□ 0.26
SLC28A1O00337 ABR-217ENST00000572441 563 ntTSL 4 BASIC16.65■□□□□ 0.26
SLC28A1O00337 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC16.65■□□□□ 0.26
SLC28A1O00337 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC16.65■□□□□ 0.26
SLC28A1O00337 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC16.65■□□□□ 0.26
SLC28A1O00337 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SLC28A1O00337 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC16.65■□□□□ 0.26
SLC28A1O00337 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
SLC28A1O00337 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
SLC28A1O00337 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
SLC28A1O00337 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
SLC28A1O00337 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
SLC28A1O00337 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC16.65■□□□□ 0.26
SLC28A1O00337 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SLC28A1O00337 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SLC28A1O00337 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
SLC28A1O00337 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
SLC28A1O00337 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
SLC28A1O00337 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
SLC28A1O00337 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC16.65■□□□□ 0.26
SLC28A1O00337 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
SLC28A1O00337 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC16.64■□□□□ 0.26
SLC28A1O00337 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.26
SLC28A1O00337 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC16.64■□□□□ 0.26
SLC28A1O00337 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC16.64■□□□□ 0.26
SLC28A1O00337 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
SLC28A1O00337 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
SLC28A1O00337 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SLC28A1O00337 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC16.64■□□□□ 0.25
SLC28A1O00337 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
SLC28A1O00337 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC16.64■□□□□ 0.25
SLC28A1O00337 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC16.64■□□□□ 0.25
SLC28A1O00337 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
SLC28A1O00337 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC16.64■□□□□ 0.25
SLC28A1O00337 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SLC28A1O00337 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SLC28A1O00337 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SLC28A1O00337 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
SLC28A1O00337 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SLC28A1O00337 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SLC28A1O00337 CTNS-203ENST00000399306 803 ntTSL 3 BASIC16.64■□□□□ 0.25
SLC28A1O00337 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC16.64■□□□□ 0.25
SLC28A1O00337 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SLC28A1O00337 NKTR-203ENST00000442970 646 ntTSL 2 BASIC16.64■□□□□ 0.25
SLC28A1O00337 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SLC28A1O00337 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC16.64■□□□□ 0.25
SLC28A1O00337 NTF6B-201ENST00000591913 560 ntBASIC16.64■□□□□ 0.25
SLC28A1O00337 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC16.64■□□□□ 0.25
SLC28A1O00337 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SLC28A1O00337 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
SLC28A1O00337 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SLC28A1O00337 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC16.64■□□□□ 0.25
SLC28A1O00337 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
SLC28A1O00337 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SLC28A1O00337 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SLC28A1O00337 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
SLC28A1O00337 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SLC28A1O00337 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC16.63■□□□□ 0.25
SLC28A1O00337 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SLC28A1O00337 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
SLC28A1O00337 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
SLC28A1O00337 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC16.63■□□□□ 0.25
SLC28A1O00337 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC16.63■□□□□ 0.25
SLC28A1O00337 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
SLC28A1O00337 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SLC28A1O00337 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SLC28A1O00337 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC16.63■□□□□ 0.25
SLC28A1O00337 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SLC28A1O00337 CCS-201ENST00000310190 942 ntTSL 5 BASIC16.63■□□□□ 0.25
SLC28A1O00337 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SLC28A1O00337 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC16.63■□□□□ 0.25
SLC28A1O00337 AL031133.1-201ENST00000406807 723 ntBASIC16.63■□□□□ 0.25
SLC28A1O00337 KLF4P1-201ENST00000412782 1185 ntBASIC16.63■□□□□ 0.25
SLC28A1O00337 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC16.63■□□□□ 0.25
SLC28A1O00337 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC16.63■□□□□ 0.25
SLC28A1O00337 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC16.63■□□□□ 0.25
SLC28A1O00337 AD001527.2-201ENST00000622994 785 ntBASIC16.63■□□□□ 0.25
SLC28A1O00337 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC16.63■□□□□ 0.25
SLC28A1O00337 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
SLC28A1O00337 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC16.63■□□□□ 0.25
SLC28A1O00337 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
SLC28A1O00337 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SLC28A1O00337 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SLC28A1O00337 STX3-203ENST00000529177 1571 ntTSL 2 BASIC16.63■□□□□ 0.25
SLC28A1O00337 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
SLC28A1O00337 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SLC28A1O00337 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC16.63■□□□□ 0.25
SLC28A1O00337 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC16.63■□□□□ 0.25
SLC28A1O00337 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SLC28A1O00337 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SLC28A1O00337 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SLC28A1O00337 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
SLC28A1O00337 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SLC28A1O00337 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC16.62■□□□□ 0.25
SLC28A1O00337 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC16.62■□□□□ 0.25
SLC28A1O00337 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SLC28A1O00337 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
SLC28A1O00337 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SLC28A1O00337 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms