Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 WT1-209ENST00000530998 2421 ntTSL 2 BASIC17.56■□□□□ 0.4
TCRBV7S3A2A0A539 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC17.56■□□□□ 0.4
TCRBV7S3A2A0A539 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC17.56■□□□□ 0.4
TCRBV7S3A2A0A539 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
TCRBV7S3A2A0A539 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
TCRBV7S3A2A0A539 KLF4P1-201ENST00000412782 1185 ntBASIC17.56■□□□□ 0.4
TCRBV7S3A2A0A539 ISCU-203ENST00000431221 799 ntTSL 2 BASIC17.56■□□□□ 0.4
TCRBV7S3A2A0A539 NKTR-203ENST00000442970 646 ntTSL 2 BASIC17.56■□□□□ 0.4
TCRBV7S3A2A0A539 TSSC2-201ENST00000450217 709 ntBASIC17.56■□□□□ 0.4
TCRBV7S3A2A0A539 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC17.56■□□□□ 0.4
TCRBV7S3A2A0A539 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC17.56■□□□□ 0.4
TCRBV7S3A2A0A539 AL049597.2-201ENST00000565575 961 ntBASIC17.56■□□□□ 0.4
TCRBV7S3A2A0A539 BNIP3P18-201ENST00000593976 575 ntBASIC17.56■□□□□ 0.4
TCRBV7S3A2A0A539 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
TCRBV7S3A2A0A539 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
TCRBV7S3A2A0A539 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC17.56■□□□□ 0.4
TCRBV7S3A2A0A539 INTS4P1-201ENST00000438455 1935 ntBASIC17.56■□□□□ 0.4
TCRBV7S3A2A0A539 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
TCRBV7S3A2A0A539 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
TCRBV7S3A2A0A539 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TCRBV7S3A2A0A539 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TCRBV7S3A2A0A539 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TCRBV7S3A2A0A539 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC17.56■□□□□ 0.4
TCRBV7S3A2A0A539 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
TCRBV7S3A2A0A539 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
TCRBV7S3A2A0A539 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
TCRBV7S3A2A0A539 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC17.56■□□□□ 0.4
TCRBV7S3A2A0A539 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TCRBV7S3A2A0A539 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TCRBV7S3A2A0A539 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TCRBV7S3A2A0A539 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
TCRBV7S3A2A0A539 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TCRBV7S3A2A0A539 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC17.55■□□□□ 0.4
TCRBV7S3A2A0A539 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
TCRBV7S3A2A0A539 AC148477.5-201ENST00000625164 1645 ntBASIC17.55■□□□□ 0.4
TCRBV7S3A2A0A539 AL603756.1-201ENST00000606511 2163 ntBASIC17.55■□□□□ 0.4
TCRBV7S3A2A0A539 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TCRBV7S3A2A0A539 CD9-202ENST00000382515 1229 ntTSL 5 BASIC17.55■□□□□ 0.4
TCRBV7S3A2A0A539 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
TCRBV7S3A2A0A539 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC17.55■□□□□ 0.4
TCRBV7S3A2A0A539 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TCRBV7S3A2A0A539 RCN1P2-201ENST00000398357 915 ntBASIC17.55■□□□□ 0.4
TCRBV7S3A2A0A539 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC17.55■□□□□ 0.4
TCRBV7S3A2A0A539 DANCR-204ENST00000444958 709 ntTSL 3 BASIC17.55■□□□□ 0.4
TCRBV7S3A2A0A539 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC17.55■□□□□ 0.4
TCRBV7S3A2A0A539 MPI-205ENST00000562606 1052 ntTSL 3 BASIC17.55■□□□□ 0.4
TCRBV7S3A2A0A539 NME3-204ENST00000563498 920 ntTSL 2 BASIC17.55■□□□□ 0.4
TCRBV7S3A2A0A539 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC17.55■□□□□ 0.4
TCRBV7S3A2A0A539 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC17.55■□□□□ 0.4
TCRBV7S3A2A0A539 AP002414.4-201ENST00000589764 1148 ntBASIC17.55■□□□□ 0.4
TCRBV7S3A2A0A539 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC17.55■□□□□ 0.4
TCRBV7S3A2A0A539 PCDHB17P-201ENST00000539533 2393 ntBASIC17.55■□□□□ 0.4
TCRBV7S3A2A0A539 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TCRBV7S3A2A0A539 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
TCRBV7S3A2A0A539 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
TCRBV7S3A2A0A539 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
TCRBV7S3A2A0A539 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TCRBV7S3A2A0A539 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TCRBV7S3A2A0A539 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
TCRBV7S3A2A0A539 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC17.55■□□□□ 0.4
TCRBV7S3A2A0A539 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
TCRBV7S3A2A0A539 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
TCRBV7S3A2A0A539 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TCRBV7S3A2A0A539 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC17.54■□□□□ 0.4
TCRBV7S3A2A0A539 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
TCRBV7S3A2A0A539 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC17.54■□□□□ 0.4
TCRBV7S3A2A0A539 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TCRBV7S3A2A0A539 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
TCRBV7S3A2A0A539 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC17.54■□□□□ 0.4
TCRBV7S3A2A0A539 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TCRBV7S3A2A0A539 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TCRBV7S3A2A0A539 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TCRBV7S3A2A0A539 AC003669.1-201ENST00000334569 611 ntBASIC17.54■□□□□ 0.4
TCRBV7S3A2A0A539 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC17.54■□□□□ 0.4
TCRBV7S3A2A0A539 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TCRBV7S3A2A0A539 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
TCRBV7S3A2A0A539 PCED1CP-201ENST00000419887 785 ntBASIC17.54■□□□□ 0.4
TCRBV7S3A2A0A539 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
TCRBV7S3A2A0A539 DRAXINP1-201ENST00000437611 948 ntBASIC17.54■□□□□ 0.4
TCRBV7S3A2A0A539 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
TCRBV7S3A2A0A539 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC17.54■□□□□ 0.4
TCRBV7S3A2A0A539 TOB2P1-201ENST00000469761 992 ntBASIC17.54■□□□□ 0.4
TCRBV7S3A2A0A539 VENTXP7-201ENST00000475503 772 ntBASIC17.54■□□□□ 0.4
TCRBV7S3A2A0A539 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TCRBV7S3A2A0A539 CDV3-207ENST00000508481 661 ntTSL 3 BASIC17.54■□□□□ 0.4
TCRBV7S3A2A0A539 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC17.54■□□□□ 0.4
TCRBV7S3A2A0A539 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC17.54■□□□□ 0.4
TCRBV7S3A2A0A539 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC17.54■□□□□ 0.4
TCRBV7S3A2A0A539 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC17.54■□□□□ 0.4
TCRBV7S3A2A0A539 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC17.54■□□□□ 0.4
TCRBV7S3A2A0A539 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC17.54■□□□□ 0.4
TCRBV7S3A2A0A539 OR6D1P-202ENST00000641007 5290 ntBASIC17.54■□□□□ 0.4
TCRBV7S3A2A0A539 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC17.54■□□□□ 0.4
TCRBV7S3A2A0A539 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TCRBV7S3A2A0A539 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
TCRBV7S3A2A0A539 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
TCRBV7S3A2A0A539 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC17.54■□□□□ 0.4
TCRBV7S3A2A0A539 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TCRBV7S3A2A0A539 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC17.54■□□□□ 0.4
TCRBV7S3A2A0A539 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms