Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC17.07■□□□□ 0.32
MKS1Q9NXB0 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
MKS1Q9NXB0 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC17.07■□□□□ 0.32
MKS1Q9NXB0 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC17.07■□□□□ 0.32
MKS1Q9NXB0 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC17.07■□□□□ 0.32
MKS1Q9NXB0 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
MKS1Q9NXB0 HYMAI.1-201ENST00000620949 238 ntBASIC17.07■□□□□ 0.32
MKS1Q9NXB0 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC17.07■□□□□ 0.32
MKS1Q9NXB0 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
MKS1Q9NXB0 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
MKS1Q9NXB0 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC17.07■□□□□ 0.32
MKS1Q9NXB0 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC17.07■□□□□ 0.32
MKS1Q9NXB0 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
MKS1Q9NXB0 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
MKS1Q9NXB0 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC17.07■□□□□ 0.32
MKS1Q9NXB0 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
MKS1Q9NXB0 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
MKS1Q9NXB0 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
MKS1Q9NXB0 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
MKS1Q9NXB0 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC17.06■□□□□ 0.32
MKS1Q9NXB0 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC17.06■□□□□ 0.32
MKS1Q9NXB0 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
MKS1Q9NXB0 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
MKS1Q9NXB0 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
MKS1Q9NXB0 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC17.06■□□□□ 0.32
MKS1Q9NXB0 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC17.06■□□□□ 0.32
MKS1Q9NXB0 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
MKS1Q9NXB0 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
MKS1Q9NXB0 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
MKS1Q9NXB0 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC17.06■□□□□ 0.32
MKS1Q9NXB0 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
MKS1Q9NXB0 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
MKS1Q9NXB0 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
MKS1Q9NXB0 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
MKS1Q9NXB0 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
MKS1Q9NXB0 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
MKS1Q9NXB0 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC17.06■□□□□ 0.32
MKS1Q9NXB0 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
MKS1Q9NXB0 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
MKS1Q9NXB0 LIN28AP1-201ENST00000429574 405 ntBASIC17.06■□□□□ 0.32
MKS1Q9NXB0 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC17.06■□□□□ 0.32
MKS1Q9NXB0 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC17.06■□□□□ 0.32
MKS1Q9NXB0 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC17.06■□□□□ 0.32
MKS1Q9NXB0 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC17.06■□□□□ 0.32
MKS1Q9NXB0 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC17.06■□□□□ 0.32
MKS1Q9NXB0 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC17.06■□□□□ 0.32
MKS1Q9NXB0 AC005336.2-201ENST00000593183 939 ntBASIC17.06■□□□□ 0.32
MKS1Q9NXB0 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC17.06■□□□□ 0.32
MKS1Q9NXB0 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
MKS1Q9NXB0 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
MKS1Q9NXB0 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
MKS1Q9NXB0 AL645728.1-201ENST00000366221 2101 ntBASIC17.06■□□□□ 0.32
MKS1Q9NXB0 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC17.06■□□□□ 0.32
MKS1Q9NXB0 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
MKS1Q9NXB0 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
MKS1Q9NXB0 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
MKS1Q9NXB0 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC17.06■□□□□ 0.32
MKS1Q9NXB0 MTHFR-217ENST00000641820 1569 ntBASIC17.06■□□□□ 0.32
MKS1Q9NXB0 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
MKS1Q9NXB0 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
MKS1Q9NXB0 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
MKS1Q9NXB0 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC17.06■□□□□ 0.32
MKS1Q9NXB0 PCDHA1-201ENST00000378133 2726 ntBASIC17.05■□□□□ 0.32
MKS1Q9NXB0 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
MKS1Q9NXB0 CICP6-201ENST00000457191 2729 ntBASIC17.05■□□□□ 0.32
MKS1Q9NXB0 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
MKS1Q9NXB0 AL391256.1-201ENST00000443260 1855 ntBASIC17.05■□□□□ 0.32
MKS1Q9NXB0 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
MKS1Q9NXB0 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
MKS1Q9NXB0 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC17.05■□□□□ 0.32
MKS1Q9NXB0 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
MKS1Q9NXB0 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC17.05■□□□□ 0.32
MKS1Q9NXB0 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
MKS1Q9NXB0 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
MKS1Q9NXB0 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
MKS1Q9NXB0 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
MKS1Q9NXB0 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC17.05■□□□□ 0.32
MKS1Q9NXB0 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
MKS1Q9NXB0 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC17.05■□□□□ 0.32
MKS1Q9NXB0 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
MKS1Q9NXB0 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC17.05■□□□□ 0.32
MKS1Q9NXB0 BX664615.1-201ENST00000443558 458 ntBASIC17.05■□□□□ 0.32
MKS1Q9NXB0 ATP5G1P1-201ENST00000448724 379 ntBASIC17.05■□□□□ 0.32
MKS1Q9NXB0 KRT18P38-201ENST00000449496 1282 ntBASIC17.05■□□□□ 0.32
MKS1Q9NXB0 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
MKS1Q9NXB0 RN7SL606P-201ENST00000472779 293 ntBASIC17.05■□□□□ 0.32
MKS1Q9NXB0 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
MKS1Q9NXB0 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC17.05■□□□□ 0.32
MKS1Q9NXB0 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
MKS1Q9NXB0 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
MKS1Q9NXB0 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC17.05■□□□□ 0.32
MKS1Q9NXB0 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
MKS1Q9NXB0 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
MKS1Q9NXB0 ABR-203ENST00000536794 2213 ntTSL 2 BASIC17.05■□□□□ 0.32
MKS1Q9NXB0 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
MKS1Q9NXB0 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC17.05■□□□□ 0.32
MKS1Q9NXB0 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
MKS1Q9NXB0 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
MKS1Q9NXB0 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
MKS1Q9NXB0 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 66.2 ms