Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
TM9SF3Q9HD45 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TM9SF3Q9HD45 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC17.3■□□□□ 0.36
TM9SF3Q9HD45 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
TM9SF3Q9HD45 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TM9SF3Q9HD45 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TM9SF3Q9HD45 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC17.3■□□□□ 0.36
TM9SF3Q9HD45 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TM9SF3Q9HD45 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC17.3■□□□□ 0.36
TM9SF3Q9HD45 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
TM9SF3Q9HD45 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC17.3■□□□□ 0.36
TM9SF3Q9HD45 CFL1-202ENST00000524553 860 ntTSL 2 BASIC17.3■□□□□ 0.36
TM9SF3Q9HD45 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC17.3■□□□□ 0.36
TM9SF3Q9HD45 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC17.3■□□□□ 0.36
TM9SF3Q9HD45 AL805961.1-202ENST00000641562 540 ntBASIC17.3■□□□□ 0.36
TM9SF3Q9HD45 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
TM9SF3Q9HD45 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC17.3■□□□□ 0.36
TM9SF3Q9HD45 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TM9SF3Q9HD45 AC009949.1-201ENST00000623048 1830 ntBASIC17.3■□□□□ 0.36
TM9SF3Q9HD45 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TM9SF3Q9HD45 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
TM9SF3Q9HD45 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TM9SF3Q9HD45 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TM9SF3Q9HD45 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TM9SF3Q9HD45 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TM9SF3Q9HD45 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TM9SF3Q9HD45 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC17.29■□□□□ 0.36
TM9SF3Q9HD45 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC17.29■□□□□ 0.36
TM9SF3Q9HD45 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC17.29■□□□□ 0.36
TM9SF3Q9HD45 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TM9SF3Q9HD45 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TM9SF3Q9HD45 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
TM9SF3Q9HD45 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TM9SF3Q9HD45 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC17.29■□□□□ 0.36
TM9SF3Q9HD45 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC17.29■□□□□ 0.36
TM9SF3Q9HD45 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC17.29■□□□□ 0.36
TM9SF3Q9HD45 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC17.29■□□□□ 0.36
TM9SF3Q9HD45 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC17.29■□□□□ 0.36
TM9SF3Q9HD45 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
TM9SF3Q9HD45 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TM9SF3Q9HD45 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TM9SF3Q9HD45 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TM9SF3Q9HD45 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC17.29■□□□□ 0.36
TM9SF3Q9HD45 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC17.29■□□□□ 0.36
TM9SF3Q9HD45 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC17.29■□□□□ 0.36
TM9SF3Q9HD45 IGHV3-52-201ENST00000519770 353 ntBASIC17.29■□□□□ 0.36
TM9SF3Q9HD45 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC17.29■□□□□ 0.36
TM9SF3Q9HD45 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC17.29■□□□□ 0.36
TM9SF3Q9HD45 SNHG9-202ENST00000564014 471 ntBASIC17.29■□□□□ 0.36
TM9SF3Q9HD45 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC17.29■□□□□ 0.36
TM9SF3Q9HD45 RPS15-207ENST00000591032 550 ntTSL 3 BASIC17.29■□□□□ 0.36
TM9SF3Q9HD45 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC17.29■□□□□ 0.36
TM9SF3Q9HD45 C20orf181-201ENST00000623918 480 ntBASIC17.29■□□□□ 0.36
TM9SF3Q9HD45 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC17.29■□□□□ 0.36
TM9SF3Q9HD45 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
TM9SF3Q9HD45 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
TM9SF3Q9HD45 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
TM9SF3Q9HD45 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
TM9SF3Q9HD45 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC17.29■□□□□ 0.36
TM9SF3Q9HD45 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TM9SF3Q9HD45 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
TM9SF3Q9HD45 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC17.29■□□□□ 0.36
TM9SF3Q9HD45 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
TM9SF3Q9HD45 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC17.29■□□□□ 0.36
TM9SF3Q9HD45 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
TM9SF3Q9HD45 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TM9SF3Q9HD45 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TM9SF3Q9HD45 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
TM9SF3Q9HD45 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC17.29■□□□□ 0.36
TM9SF3Q9HD45 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
TM9SF3Q9HD45 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC17.29■□□□□ 0.36
TM9SF3Q9HD45 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC17.28■□□□□ 0.36
TM9SF3Q9HD45 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
TM9SF3Q9HD45 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TM9SF3Q9HD45 KRT18P28-201ENST00000453838 1332 ntBASIC17.28■□□□□ 0.36
TM9SF3Q9HD45 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TM9SF3Q9HD45 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TM9SF3Q9HD45 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC17.28■□□□□ 0.36
TM9SF3Q9HD45 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC17.28■□□□□ 0.36
TM9SF3Q9HD45 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TM9SF3Q9HD45 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC17.28■□□□□ 0.36
TM9SF3Q9HD45 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC17.28■□□□□ 0.36
TM9SF3Q9HD45 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC17.28■□□□□ 0.36
TM9SF3Q9HD45 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
TM9SF3Q9HD45 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TM9SF3Q9HD45 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TM9SF3Q9HD45 DDX43P3-201ENST00000441064 443 ntBASIC17.28■□□□□ 0.36
TM9SF3Q9HD45 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC17.28■□□□□ 0.36
TM9SF3Q9HD45 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC17.28■□□□□ 0.36
TM9SF3Q9HD45 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC17.28■□□□□ 0.36
TM9SF3Q9HD45 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
TM9SF3Q9HD45 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC17.28■□□□□ 0.36
TM9SF3Q9HD45 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TM9SF3Q9HD45 POR-209ENST00000439269 1858 ntTSL 2 BASIC17.28■□□□□ 0.36
TM9SF3Q9HD45 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TM9SF3Q9HD45 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
TM9SF3Q9HD45 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
TM9SF3Q9HD45 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
TM9SF3Q9HD45 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
TM9SF3Q9HD45 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC17.28■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms