Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC18.69■□□□□ 0.58
CCDC42Q96M95 AC005363.2-201ENST00000618631 242 ntBASIC18.69■□□□□ 0.58
CCDC42Q96M95 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC18.69■□□□□ 0.58
CCDC42Q96M95 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC18.69■□□□□ 0.58
CCDC42Q96M95 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC42Q96M95 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC42Q96M95 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC42Q96M95 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC42Q96M95 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC42Q96M95 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC42Q96M95 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC42Q96M95 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC42Q96M95 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC42Q96M95 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC18.68■□□□□ 0.58
CCDC42Q96M95 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC18.68■□□□□ 0.58
CCDC42Q96M95 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC18.68■□□□□ 0.58
CCDC42Q96M95 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC42Q96M95 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC42Q96M95 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC42Q96M95 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC42Q96M95 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC42Q96M95 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC18.68■□□□□ 0.58
CCDC42Q96M95 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC18.68■□□□□ 0.58
CCDC42Q96M95 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC42Q96M95 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC18.68■□□□□ 0.58
CCDC42Q96M95 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC42Q96M95 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC42Q96M95 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC42Q96M95 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC42Q96M95 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC42Q96M95 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC18.68■□□□□ 0.58
CCDC42Q96M95 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC42Q96M95 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC18.68■□□□□ 0.58
CCDC42Q96M95 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC42Q96M95 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC42Q96M95 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
CCDC42Q96M95 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC18.67■□□□□ 0.58
CCDC42Q96M95 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
CCDC42Q96M95 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC42Q96M95 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC18.67■□□□□ 0.58
CCDC42Q96M95 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
CCDC42Q96M95 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
CCDC42Q96M95 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC42Q96M95 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC42Q96M95 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC42Q96M95 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC42Q96M95 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC18.67■□□□□ 0.58
CCDC42Q96M95 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC42Q96M95 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC42Q96M95 TERF1P1-201ENST00000311003 1181 ntBASIC18.67■□□□□ 0.58
CCDC42Q96M95 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC42Q96M95 TSPY5P-201ENST00000426936 936 ntBASIC18.67■□□□□ 0.58
CCDC42Q96M95 AC112907.2-201ENST00000448639 330 ntBASIC18.67■□□□□ 0.58
CCDC42Q96M95 KRT18P38-201ENST00000449496 1282 ntBASIC18.67■□□□□ 0.58
CCDC42Q96M95 VENTXP5-201ENST00000523979 775 ntBASIC18.67■□□□□ 0.58
CCDC42Q96M95 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
CCDC42Q96M95 AC124947.2-201ENST00000547118 1133 ntBASIC18.67■□□□□ 0.58
CCDC42Q96M95 RNF126P1-202ENST00000569893 925 ntBASIC18.67■□□□□ 0.58
CCDC42Q96M95 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC18.67■□□□□ 0.58
CCDC42Q96M95 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
CCDC42Q96M95 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
CCDC42Q96M95 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC42Q96M95 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC18.67■□□□□ 0.58
CCDC42Q96M95 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC42Q96M95 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC42Q96M95 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
CCDC42Q96M95 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC42Q96M95 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC18.67■□□□□ 0.58
CCDC42Q96M95 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC42Q96M95 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC18.67■□□□□ 0.58
CCDC42Q96M95 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC42Q96M95 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC42Q96M95 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
CCDC42Q96M95 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC42Q96M95 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC42Q96M95 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC42Q96M95 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC18.66■□□□□ 0.58
CCDC42Q96M95 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC18.66■□□□□ 0.58
CCDC42Q96M95 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
CCDC42Q96M95 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC42Q96M95 AC078925.2-201ENST00000624013 1973 ntBASIC18.66■□□□□ 0.58
CCDC42Q96M95 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC42Q96M95 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC18.66■□□□□ 0.58
CCDC42Q96M95 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC42Q96M95 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC18.66■□□□□ 0.58
CCDC42Q96M95 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC18.66■□□□□ 0.58
CCDC42Q96M95 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC42Q96M95 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC42Q96M95 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
CCDC42Q96M95 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC18.66■□□□□ 0.58
CCDC42Q96M95 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC42Q96M95 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC42Q96M95 BAALC-202ENST00000306391 243 ntTSL 5 BASIC18.66■□□□□ 0.58
CCDC42Q96M95 BAALC-204ENST00000330955 222 ntTSL 5 BASIC18.66■□□□□ 0.58
CCDC42Q96M95 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC42Q96M95 RNF152P1-201ENST00000397754 604 ntBASIC18.66■□□□□ 0.58
CCDC42Q96M95 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC42Q96M95 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC18.66■□□□□ 0.58
CCDC42Q96M95 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC42Q96M95 AC093827.2-201ENST00000512654 315 ntBASIC18.66■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 55 ms