Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CLIP3Q96DZ5 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CLIP3Q96DZ5 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CLIP3Q96DZ5 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
CLIP3Q96DZ5 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CLIP3Q96DZ5 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC16.74■□□□□ 0.27
CLIP3Q96DZ5 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CLIP3Q96DZ5 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC16.74■□□□□ 0.27
CLIP3Q96DZ5 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC16.74■□□□□ 0.27
CLIP3Q96DZ5 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CLIP3Q96DZ5 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
CLIP3Q96DZ5 PMPCAP1-201ENST00000508114 1576 ntBASIC16.74■□□□□ 0.27
CLIP3Q96DZ5 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CLIP3Q96DZ5 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC16.74■□□□□ 0.27
CLIP3Q96DZ5 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CLIP3Q96DZ5 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CLIP3Q96DZ5 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
CLIP3Q96DZ5 INIP-202ENST00000374236 874 ntTSL 2 BASIC16.74■□□□□ 0.27
CLIP3Q96DZ5 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
CLIP3Q96DZ5 PMS2P1-201ENST00000431037 1228 ntBASIC16.74■□□□□ 0.27
CLIP3Q96DZ5 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CLIP3Q96DZ5 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
CLIP3Q96DZ5 RPL13AP23-201ENST00000480739 586 ntBASIC16.74■□□□□ 0.27
CLIP3Q96DZ5 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC16.74■□□□□ 0.27
CLIP3Q96DZ5 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC16.74■□□□□ 0.27
CLIP3Q96DZ5 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC16.74■□□□□ 0.27
CLIP3Q96DZ5 AC025062.2-201ENST00000605477 670 ntBASIC16.74■□□□□ 0.27
CLIP3Q96DZ5 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CLIP3Q96DZ5 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CLIP3Q96DZ5 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
CLIP3Q96DZ5 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CLIP3Q96DZ5 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
CLIP3Q96DZ5 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC16.74■□□□□ 0.27
CLIP3Q96DZ5 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CLIP3Q96DZ5 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CLIP3Q96DZ5 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
CLIP3Q96DZ5 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CLIP3Q96DZ5 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CLIP3Q96DZ5 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC16.74■□□□□ 0.27
CLIP3Q96DZ5 AC079776.2-201ENST00000641154 1609 ntBASIC16.74■□□□□ 0.27
CLIP3Q96DZ5 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC16.74■□□□□ 0.27
CLIP3Q96DZ5 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CLIP3Q96DZ5 AL390961.4-201ENST00000623958 2535 ntBASIC16.73■□□□□ 0.27
CLIP3Q96DZ5 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CLIP3Q96DZ5 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
CLIP3Q96DZ5 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CLIP3Q96DZ5 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CLIP3Q96DZ5 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
CLIP3Q96DZ5 AC100803.2-201ENST00000562459 1963 ntBASIC16.73■□□□□ 0.27
CLIP3Q96DZ5 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CLIP3Q96DZ5 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC16.73■□□□□ 0.27
CLIP3Q96DZ5 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CLIP3Q96DZ5 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC16.73■□□□□ 0.27
CLIP3Q96DZ5 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CLIP3Q96DZ5 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC16.73■□□□□ 0.27
CLIP3Q96DZ5 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC16.73■□□□□ 0.27
CLIP3Q96DZ5 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CLIP3Q96DZ5 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CLIP3Q96DZ5 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
CLIP3Q96DZ5 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CLIP3Q96DZ5 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
CLIP3Q96DZ5 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
CLIP3Q96DZ5 AC092910.1-201ENST00000482027 1129 ntBASIC16.73■□□□□ 0.27
CLIP3Q96DZ5 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC16.73■□□□□ 0.27
CLIP3Q96DZ5 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC16.73■□□□□ 0.27
CLIP3Q96DZ5 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CLIP3Q96DZ5 RNF151-202ENST00000569210 853 ntTSL 2 BASIC16.73■□□□□ 0.27
CLIP3Q96DZ5 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC16.73■□□□□ 0.27
CLIP3Q96DZ5 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CLIP3Q96DZ5 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CLIP3Q96DZ5 AD001527.2-201ENST00000622994 785 ntBASIC16.73■□□□□ 0.27
CLIP3Q96DZ5 AC073592.5-201ENST00000624854 528 ntBASIC16.73■□□□□ 0.27
CLIP3Q96DZ5 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC16.73■□□□□ 0.27
CLIP3Q96DZ5 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
CLIP3Q96DZ5 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CLIP3Q96DZ5 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
CLIP3Q96DZ5 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CLIP3Q96DZ5 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
CLIP3Q96DZ5 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CLIP3Q96DZ5 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CLIP3Q96DZ5 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
CLIP3Q96DZ5 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CLIP3Q96DZ5 ZNF259P1-201ENST00000407656 1365 ntBASIC16.73■□□□□ 0.27
CLIP3Q96DZ5 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
CLIP3Q96DZ5 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC16.73■□□□□ 0.27
CLIP3Q96DZ5 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CLIP3Q96DZ5 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
CLIP3Q96DZ5 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC16.73■□□□□ 0.27
CLIP3Q96DZ5 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CLIP3Q96DZ5 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CLIP3Q96DZ5 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC16.72■□□□□ 0.27
CLIP3Q96DZ5 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC16.72■□□□□ 0.27
CLIP3Q96DZ5 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC16.72■□□□□ 0.27
CLIP3Q96DZ5 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CLIP3Q96DZ5 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC16.72■□□□□ 0.27
CLIP3Q96DZ5 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CLIP3Q96DZ5 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
CLIP3Q96DZ5 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
CLIP3Q96DZ5 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC16.72■□□□□ 0.27
CLIP3Q96DZ5 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC16.72■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 52.2 ms