Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.592e-6■□□□□ 8.5
DDX55Q8NHQ9 EEF1D-251ENST00000534232 817 ntTSL 518.28■□□□□ 0.522e-6■□□□□ 8.5
DDX55Q8NHQ9 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC18.23■□□□□ 0.511e-9■□□□□ 8.5
DDX55Q8NHQ9 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.482e-12■□□□□ 8.5
DDX55Q8NHQ9 YWHAE-204ENST00000486241 691 ntTSL 217.84■□□□□ 0.452e-6■□□□□ 8.5
DDX55Q8NHQ9 UXS1-210ENST00000473338 1547 ntTSL 1 (best)17.79■□□□□ 0.442e-6■□□□□ 8.5
DDX55Q8NHQ9 ISOC2-206ENST00000589108 706 ntTSL 217.64■□□□□ 0.411e-10■□□□□ 8.5
DDX55Q8NHQ9 ISOC2-205ENST00000589080 763 ntTSL 217.57■□□□□ 0.41e-10■□□□□ 8.5
DDX55Q8NHQ9 PSMA6-208ENST00000554843 655 ntTSL 217.56■□□□□ 0.45e-7■□□□□ 8.5
DDX55Q8NHQ9 GLMP-204ENST00000472870 1188 ntTSL 517.45■□□□□ 0.382e-12■□□□□ 8.5
DDX55Q8NHQ9 TTC3-209ENST00000438055 3606 ntTSL 517.44■□□□□ 0.381e-9■□□□□ 8.5
DDX55Q8NHQ9 PFN2-202ENST00000423691 911 ntTSL 2 BASIC17.43■□□□□ 0.382e-6■□□□□ 8.5
DDX55Q8NHQ9 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC17.16■□□□□ 0.342e-6■□□□□ 8.5
DDX55Q8NHQ9 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC17.15■□□□□ 0.342e-6■□□□□ 8.5
DDX55Q8NHQ9 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.332e-6■□□□□ 8.5
DDX55Q8NHQ9 PRDX1-204ENST00000424390 795 ntTSL 217.03■□□□□ 0.321e-10■□□□□ 8.5
DDX55Q8NHQ9 TTC3-207ENST00000418766 3771 ntTSL 516.79■□□□□ 0.281e-9■□□□□ 8.5
DDX55Q8NHQ9 NDUFA4-203ENST00000470761 502 ntTSL 416.74■□□□□ 0.272e-6■□□□□ 8.5
DDX55Q8NHQ9 EEF1D-215ENST00000526340 770 ntTSL 316.67■□□□□ 0.262e-6■□□□□ 8.5
DDX55Q8NHQ9 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.251e-9■□□□□ 8.5
DDX55Q8NHQ9 EEF1D-210ENST00000525223 610 ntTSL 316.51■□□□□ 0.232e-6■□□□□ 8.5
DDX55Q8NHQ9 PSMA6-215ENST00000622405 978 ntTSL 2 BASIC16.46■□□□□ 0.235e-7■□□□□ 8.5
DDX55Q8NHQ9 SLC19A1-206ENST00000460174 600 ntTSL 316.38■□□□□ 0.212e-6■□□□□ 8.5
DDX55Q8NHQ9 TTC3-219ENST00000485402 3626 ntTSL 516.06■□□□□ 0.161e-9■□□□□ 8.5
DDX55Q8NHQ9 YWHAE-212ENST00000575977 540 ntTSL 2 BASIC15.99■□□□□ 0.152e-6■□□□□ 8.5
DDX55Q8NHQ9 YWHAE-201ENST00000264335 2211 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.132e-6■□□□□ 8.5
DDX55Q8NHQ9 EEF1D-248ENST00000533494 758 ntTSL 515.47■□□□□ 0.075e-18■□□□□ 8.5
DDX55Q8NHQ9 PRDX1-202ENST00000319248 1021 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.061e-10■□□□□ 8.5
DDX55Q8NHQ9 ACTN1-211ENST00000553882 2636 ntTSL 215.3■□□□□ 0.045e-7■□□□□ 8.5
DDX55Q8NHQ9 SLC19A1-203ENST00000417954 3572 ntTSL 1 (best)15.12■□□□□ 0.012e-6■□□□□ 8.5
DDX55Q8NHQ9 NR2F2-AS1-210ENST00000561344 966 ntTSL 1 (best) BASIC14.96□□□□□ -0.012e-17■□□□□ 8.5
DDX55Q8NHQ9 GLMP-209ENST00000482579 572 ntTSL 314.86□□□□□ -0.032e-12■□□□□ 8.5
DDX55Q8NHQ9 SLC19A1-201ENST00000311124 3811 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.032e-6■□□□□ 8.5
DDX55Q8NHQ9 LSM14A-201ENST00000433627 3424 ntAPPRIS ALT1 TSL 1 (best) BASIC14.85□□□□□ -0.031e-9■□□□□ 8.5
DDX55Q8NHQ9 LSM14A-203ENST00000544216 3596 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.041e-9■□□□□ 8.5
DDX55Q8NHQ9 HNRNPUL1-204ENST00000392006 3555 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.061e-9■□□□□ 8.5
DDX55Q8NHQ9 PRDX1-203ENST00000372079 609 ntTSL 3 BASIC14.68□□□□□ -0.061e-10■□□□□ 8.5
DDX55Q8NHQ9 ARGLU1-203ENST00000400198 3390 ntTSL 1 (best) BASIC14.56□□□□□ -0.082e-6■□□□□ 8.5
DDX55Q8NHQ9 GATAD2A-203ENST00000404158 5776 ntAPPRIS ALT1 TSL 2 BASIC14.44□□□□□ -0.12e-6■□□□□ 8.5
DDX55Q8NHQ9 PSMA6-206ENST00000554541 925 ntTSL 214.34□□□□□ -0.115e-7■□□□□ 8.5
DDX55Q8NHQ9 MTG1-203ENST00000460848 2730 ntTSL 214.32□□□□□ -0.121e-9■□□□□ 8.5
DDX55Q8NHQ9 IRF2BPL-201ENST00000238647 4157 ntAPPRIS P1 BASIC14.26□□□□□ -0.132e-6■□□□□ 8.5
DDX55Q8NHQ9 GATAD2A-201ENST00000358713 5510 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.162e-6■□□□□ 8.5
DDX55Q8NHQ9 MTG1-206ENST00000492266 413 ntTSL 213.43□□□□□ -0.261e-9■□□□□ 8.5
DDX55Q8NHQ9 YWHAE-205ENST00000489287 465 ntTSL 213.32□□□□□ -0.282e-6■□□□□ 8.5
DDX55Q8NHQ9 MBTPS1-205ENST00000562906 2925 ntTSL 213.32□□□□□ -0.285e-7■□□□□ 8.5
DDX55Q8NHQ9 EIF4EBP1-202ENST00000520657 695 ntTSL 313.3□□□□□ -0.285e-7■□□□□ 8.5
DDX55Q8NHQ9 MBTPS1-216ENST00000570064 3086 ntTSL 213.23□□□□□ -0.295e-7■□□□□ 8.5
DDX55Q8NHQ9 SND1-212ENST00000485871 597 ntTSL 313.21□□□□□ -0.293e-22■□□□□ 8.5
DDX55Q8NHQ9 MBTPS1-201ENST00000343411 4338 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.35e-7■□□□□ 8.5
DDX55Q8NHQ9 YWHAE-211ENST00000573196 739 ntTSL 213.08□□□□□ -0.322e-6■□□□□ 8.5
DDX55Q8NHQ9 MBTPS1-204ENST00000562886 3333 ntTSL 212.87□□□□□ -0.355e-7■□□□□ 8.5
DDX55Q8NHQ9 NR2F2-AS1-201ENST00000502125 1930 ntTSL 2 BASIC12.44□□□□□ -0.422e-17■□□□□ 8.5
DDX55Q8NHQ9 PSMA6-211ENST00000555764 1002 ntTSL 2 BASIC12.43□□□□□ -0.425e-7■□□□□ 8.5
DDX55Q8NHQ9 HNRNPUL1-202ENST00000352456 3426 ntTSL 1 (best) BASIC12.42□□□□□ -0.421e-9■□□□□ 8.5
DDX55Q8NHQ9 YWHAE-210ENST00000573026 780 ntTSL 3 BASIC12.25□□□□□ -0.452e-6■□□□□ 8.5
DDX55Q8NHQ9 YWHAE-207ENST00000498643 312 ntTSL 312.12□□□□□ -0.472e-6■□□□□ 8.5
DDX55Q8NHQ9 PRRC2A-213ENST00000487839 1071 ntTSL 511.95□□□□□ -0.51e-10■□□□□ 8.5
DDX55Q8NHQ9 ACTN1-216ENST00000556083 4674 ntTSL 1 (best)11.91□□□□□ -0.55e-7■□□□□ 8.5
DDX55Q8NHQ9 ACTN1-201ENST00000193403 3779 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.535e-7■□□□□ 8.5
DDX55Q8NHQ9 GATAD2A-205ENST00000418032 3480 ntTSL 211.72□□□□□ -0.532e-6■□□□□ 8.5
DDX55Q8NHQ9 NR2F2-AS1-203ENST00000558929 574 ntTSL 5 BASIC11.67□□□□□ -0.542e-17■□□□□ 8.5
DDX55Q8NHQ9 EEF1D-226ENST00000529516 473 ntTSL 311.6□□□□□ -0.555e-18■□□□□ 8.5
DDX55Q8NHQ9 UXS1-202ENST00000409032 1935 ntTSL 1 (best) BASIC11.57□□□□□ -0.562e-6■□□□□ 8.5
DDX55Q8NHQ9 LSM14A-206ENST00000588582 3601 ntTSL 211.34□□□□□ -0.591e-9■□□□□ 8.5
DDX55Q8NHQ9 AEBP2-203ENST00000398731 722 ntTSL 311.08□□□□□ -0.642e-6■□□□□ 8.5
DDX55Q8NHQ9 YWHAE-203ENST00000469398 676 ntTSL 210.97□□□□□ -0.652e-6■□□□□ 8.5
DDX55Q8NHQ9 ACTN1-203ENST00000394419 3464 ntAPPRIS ALT1 TSL 1 (best) BASIC10.9□□□□□ -0.665e-7■□□□□ 8.5
DDX55Q8NHQ9 TTC3-202ENST00000355666 7712 ntAPPRIS P1 TSL 5 BASIC10.56□□□□□ -0.721e-9■□□□□ 8.5
DDX55Q8NHQ9 PSMA6-207ENST00000554620 790 ntTSL 510.08□□□□□ -0.85e-7■□□□□ 8.5
DDX55Q8NHQ9 PSMA6-209ENST00000554961 814 ntTSL 210.08□□□□□ -0.85e-7■□□□□ 8.5
DDX55Q8NHQ9 AEBP2-202ENST00000360995 2533 ntAPPRIS ALT2 TSL 2 BASIC10.01□□□□□ -0.812e-6■□□□□ 8.5
DDX55Q8NHQ9 PSMA6-202ENST00000540871 912 ntTSL 2 BASIC9.92□□□□□ -0.825e-7■□□□□ 8.5
DDX55Q8NHQ9 PRDX1-205ENST00000447184 606 ntTSL 59.7□□□□□ -0.861e-10■□□□□ 8.5
DDX55Q8NHQ9 USP8-203ENST00000419830 2402 ntTSL 29.56□□□□□ -0.882e-6■□□□□ 8.5
DDX55Q8NHQ9 PSMA6-203ENST00000553688 787 ntTSL 59.4□□□□□ -0.95e-7■□□□□ 8.5
DDX55Q8NHQ9 PSMA6-204ENST00000553809 879 ntAPPRIS ALT1 TSL 3 BASIC8.15□□□□□ -1.15e-7■□□□□ 8.5
DDX55Q8NHQ9 PSMA6-214ENST00000556506 763 ntTSL 5 BASIC8.12□□□□□ -1.115e-7■□□□□ 8.5
DDX55Q8NHQ9 NR2F2-AS1-209ENST00000560800 549 ntTSL 4 BASIC7.83□□□□□ -1.162e-17■□□□□ 8.5
DDX55Q8NHQ9 NDUFA4-201ENST00000339600 2130 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.172e-6■□□□□ 8.5
DDX55Q8NHQ9 PSMA6-201ENST00000261479 1029 ntAPPRIS P2 TSL 1 (best) BASIC7.69□□□□□ -1.185e-7■□□□□ 8.5
DDX55Q8NHQ9 ARGLU1-204ENST00000472226 1336 ntTSL 27.5□□□□□ -1.212e-6■□□□□ 8.5
DDX55Q8NHQ9 ANKUB1-207ENST00000481585 431 ntTSL 37.49□□□□□ -1.212e-6■□□□□ 8.5
DDX55Q8NHQ9 PSMA6-210ENST00000555050 309 ntTSL 26.99□□□□□ -1.295e-7■□□□□ 8.5
DDX55Q8NHQ9 NDUFA4-205ENST00000486007 434 ntTSL 26.82□□□□□ -1.322e-6■□□□□ 8.5
DDX55Q8NHQ9 PLEKHB1-218ENST00000544282 375 ntTSL 56.64□□□□□ -1.352e-6■□□□□ 8.5
DDX55Q8NHQ9 AL121594.3-201ENST00000557565 3857 ntAPPRIS P1 TSL 2 BASIC6.48□□□□□ -1.375e-7■□□□□ 8.5
DDX55Q8NHQ9 RAN-209ENST00000539498 1659 ntTSL 26.23□□□□□ -1.415e-7■□□□□ 8.5
DDX55Q8NHQ9 AEBP2-205ENST00000512223 507 ntTSL 35.87□□□□□ -1.472e-6■□□□□ 8.5
DDX55Q8NHQ9 USP8-201ENST00000307179 4243 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.482e-6■□□□□ 8.5
DDX55Q8NHQ9 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.512e-6■□□□□ 8.5
DDX55Q8NHQ9 NR2F2-AS1-211ENST00000561402 589 ntTSL 3 BASIC5.28□□□□□ -1.562e-17■□□□□ 8.5
DDX55Q8NHQ9 AL355312.2-202ENST00000628047 876 ntTSL 54.49□□□□□ -1.692e-6■□□□□ 8.5
DDX55Q8NHQ9 NDUFA4-202ENST00000463308 288 ntTSL 23.32□□□□□ -1.882e-6■□□□□ 8.5
DDX55Q8NHQ9 ERBB3-213ENST00000549832 3289 ntTSL 2 BASIC8.59□□□□□ -1.033e-7■□□□□ 8.5
DDX55Q8NHQ9 AC034102.2-201ENST00000548861 489 ntAPPRIS P1 TSL 5 BASIC6.64□□□□□ -1.353e-7■□□□□ 8.5
DDX55Q8NHQ9 NDRG1-216ENST00000521026 2145 ntTSL 215.06■□□□□ 01e-20■□□□□ 8.5
DDX55Q8NHQ9 NDRG1-218ENST00000521438 2810 ntTSL 211.4□□□□□ -0.591e-20■□□□□ 8.5
DDX55Q8NHQ9 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC23.88■■□□□ 1.413e-6■□□□□ 8.5
DDX55Q8NHQ9 PDXDC1-217ENST00000570001 4828 ntTSL 212.45□□□□□ -0.423e-6■□□□□ 8.5
Retrieved 100 of 15,504 protein–RNA pairs in 431.8 ms