RNA–Protein interactions for RNA: ENST00000463308.1

NDUFA4-202, Transcript of NDUFA4, mitochondrial complex associated, humanhuman

TSL 2

Gene NDUFA4, Length 288 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NDUFA4-202ENST00000463308 AEBP2Q6ZN18 517 aaPredicted RBP24.15■■□□□ 1.46
NDUFA4-202ENST00000463308 CHIC1Q5VXU3 224 aa22.72■■□□□ 1.23
NDUFA4-202ENST00000463308 SENP3Q9H4L4 574 aaPredicted RBP20.88■□□□□ 0.93
NDUFA4-202ENST00000463308 PHF23Q9BUL5 403 aaPredicted RBP20.41■□□□□ 0.86
NDUFA4-202ENST00000463308 FOXD1Q16676 465 aa19.44■□□□□ 0.7
NDUFA4-202ENST00000463308 POTEDQ86YR6 584 aa19.36■□□□□ 0.69
NDUFA4-202ENST00000463308 MSH5O43196 834 aa18.63■□□□□ 0.57
NDUFA4-202ENST00000463308 PIAS4Q8N2W9 510 aaPredicted RBP18.03■□□□□ 0.48
NDUFA4-202ENST00000463308 PPP6R1Q9UPN7 881 aa17.54■□□□□ 0.4
NDUFA4-202ENST00000463308 PLPPR3Q6T4P5 718 aa17.52■□□□□ 0.4
NDUFA4-202ENST00000463308 ADRA2BP18089 450 aa17.45■□□□□ 0.38
NDUFA4-202ENST00000463308 DMRT2Q9Y5R5 561 aa16.4■□□□□ 0.22
NDUFA4-202ENST00000463308 CACNB1Q02641 598 aaPredicted RBP16.38■□□□□ 0.21
NDUFA4-202ENST00000463308 MAPK8IP2Q13387 824 aaPredicted RBP16.23■□□□□ 0.19
NDUFA4-202ENST00000463308 SCAF1Q9H7N4 1312 aaKnown RBP16.15■□□□□ 0.18
NDUFA4-202ENST00000463308 RNF39Q9H2S5 420 aa15.76■□□□□ 0.11
NDUFA4-202ENST00000463308 DCAF8L1A6NGE4 600 aa15.73■□□□□ 0.11
NDUFA4-202ENST00000463308 C1QBPQ07021 282 aaKnown RBP15.54■□□□□ 0.08
NDUFA4-202ENST00000463308 HOXD11P31277 338 aaPredicted RBP15.51■□□□□ 0.07
NDUFA4-202ENST00000463308 DNAJC5BQ9UF47 199 aa15.23■□□□□ 0.03
NDUFA4-202ENST00000463308 RNF216Q9NWF9 866 aaPredicted RBP15.21■□□□□ 0.03
NDUFA4-202ENST00000463308 PPP4R3CPQ6ZMV5 832 aa15.2■□□□□ 0.02
NDUFA4-202ENST00000463308 CNKSR2Q8WXI2 1034 aa15.14■□□□□ 0.01
NDUFA4-202ENST00000463308 POTEHQ6S545 545 aa15.05■□□□□ -0
NDUFA4-202ENST00000463308 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.77□□□□□ -0.05
NDUFA4-202ENST00000463308 NCBP3Q53F19 620 aaKnown RBP14.48□□□□□ -0.09
NDUFA4-202ENST00000463308 DSG3P32926 999 aa14.47□□□□□ -0.09
NDUFA4-202ENST00000463308 CAPN15O75808 1086 aa14.38□□□□□ -0.11
NDUFA4-202ENST00000463308 U3KPZ7 1027 aaPredicted RBP14.32□□□□□ -0.12
NDUFA4-202ENST00000463308 SPINK5Q9NQ38 1064 aaPredicted RBP14.31□□□□□ -0.12
NDUFA4-202ENST00000463308 NPM3O75607 178 aaKnown RBP14.16□□□□□ -0.14
NDUFA4-202ENST00000463308 APLP2Q06481 763 aa14.03□□□□□ -0.16
NDUFA4-202ENST00000463308 ZNF219Q9P2Y4 722 aaPredicted RBP14□□□□□ -0.17
NDUFA4-202ENST00000463308 TRHP20396 242 aaPredicted RBP13.95□□□□□ -0.18
NDUFA4-202ENST00000463308 RBM42Q9BTD8 480 aaKnown RBP13.94□□□□□ -0.18
NDUFA4-202ENST00000463308 ABCB7O75027 752 aa13.93□□□□□ -0.18
NDUFA4-202ENST00000463308 CHRDL2Q6WN34 429 aa13.86□□□□□ -0.19
NDUFA4-202ENST00000463308 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.81□□□□□ -0.2
NDUFA4-202ENST00000463308 HNRNPUL2Q1KMD3 747 aaKnown RBP13.81□□□□□ -0.2
NDUFA4-202ENST00000463308 SP7Q8TDD2 431 aaPredicted RBP13.76□□□□□ -0.21
NDUFA4-202ENST00000463308 SLC4A2P04920 1241 aa13.69□□□□□ -0.22
NDUFA4-202ENST00000463308 SAMD1Q6SPF0 538 aaPredicted RBP13.65□□□□□ -0.22
NDUFA4-202ENST00000463308 AKT1S1Q96B36 256 aa13.42□□□□□ -0.26
NDUFA4-202ENST00000463308 POLA2Q14181 598 aa13.41□□□□□ -0.26
NDUFA4-202ENST00000463308 PIP4P2Q8N4L2 257 aa13.34□□□□□ -0.27
NDUFA4-202ENST00000463308 HAX1O00165 279 aa13.31□□□□□ -0.28
NDUFA4-202ENST00000463308 REM2Q8IYK8 340 aaPredicted RBP13.23□□□□□ -0.29
NDUFA4-202ENST00000463308 ZBTB12Q9Y330 459 aaPredicted RBP13.22□□□□□ -0.29
NDUFA4-202ENST00000463308 MYCNP04198 464 aaPredicted RBP13.19□□□□□ -0.3
NDUFA4-202ENST00000463308 KCNA4P22459 653 aa13.17□□□□□ -0.3
NDUFA4-202ENST00000463308 FXR2P51116 673 aaKnown RBP eCLIP13.16□□□□□ -0.3
NDUFA4-202ENST00000463308 PITPNM1O00562 1244 aa13.09□□□□□ -0.31
NDUFA4-202ENST00000463308 OSCARQ8IYS5 282 aa13□□□□□ -0.33
NDUFA4-202ENST00000463308 EVX2Q03828 476 aa12.98□□□□□ -0.33
NDUFA4-202ENST00000463308 LHX8Q68G74 356 aa12.89□□□□□ -0.35
NDUFA4-202ENST00000463308 ATF5Q9Y2D1 282 aaPredicted RBP12.8□□□□□ -0.36
NDUFA4-202ENST00000463308 C19orf67A6NJJ6 358 aa12.77□□□□□ -0.37
NDUFA4-202ENST00000463308 PRKAR2AP13861 404 aaKnown RBP12.76□□□□□ -0.37
NDUFA4-202ENST00000463308 GABBR2O75899 941 aa12.74□□□□□ -0.37
NDUFA4-202ENST00000463308 SPDYE2BA6NHP3 402 aa12.69□□□□□ -0.38
NDUFA4-202ENST00000463308 SPDYE6P0CI01 402 aa12.69□□□□□ -0.38
NDUFA4-202ENST00000463308 SPDYE2Q495Y8 402 aa12.69□□□□□ -0.38
NDUFA4-202ENST00000463308 PLSCR2Q9NRY7 297 aa12.67□□□□□ -0.38
NDUFA4-202ENST00000463308 SPDYE1Q8NFV5 336 aaPredicted RBP12.65□□□□□ -0.38
NDUFA4-202ENST00000463308 FOXD4L1Q9NU39 408 aa12.61□□□□□ -0.39
NDUFA4-202ENST00000463308 CLEC11AQ9Y240 323 aa12.6□□□□□ -0.39
NDUFA4-202ENST00000463308 FBLN2P98095 1184 aa12.52□□□□□ -0.41
NDUFA4-202ENST00000463308 CLCN6P51797 869 aa12.46□□□□□ -0.41
NDUFA4-202ENST00000463308 POTEIP0CG38 1075 aa12.41□□□□□ -0.42
NDUFA4-202ENST00000463308 SSUH2Q9Y2M2 353 aa12.39□□□□□ -0.43
NDUFA4-202ENST00000463308 CHADLQ6NUI6 762 aa12.38□□□□□ -0.43
NDUFA4-202ENST00000463308 ATXN8OSP0DMR3 200 aa12.37□□□□□ -0.43
NDUFA4-202ENST00000463308 ZNF692Q9BU19 519 aaPredicted RBP12.37□□□□□ -0.43
NDUFA4-202ENST00000463308 SLC4A1APQ9BWU0 796 aaKnown RBP12.33□□□□□ -0.44
NDUFA4-202ENST00000463308 PRR29P0C7W0 189 aa12.32□□□□□ -0.44
NDUFA4-202ENST00000463308 CD44P16070 742 aaKnown RBP12.32□□□□□ -0.44
NDUFA4-202ENST00000463308 DCBLD2Q96PD2 775 aa12.29□□□□□ -0.44
NDUFA4-202ENST00000463308 MKRN4PQ13434 485 aaPredicted RBP12.2□□□□□ -0.46
NDUFA4-202ENST00000463308 FARP1Q9Y4F1 1045 aaPredicted RBP12.2□□□□□ -0.46
NDUFA4-202ENST00000463308 POTEMA6NI47 508 aa12.17□□□□□ -0.46
NDUFA4-202ENST00000463308 PCDH10Q9P2E7 1040 aa12.14□□□□□ -0.47
NDUFA4-202ENST00000463308 PABPN1Q86U42 306 aaKnown RBP eCLIP12.13□□□□□ -0.47
NDUFA4-202ENST00000463308 OTUD5Q96G74 571 aa12.13□□□□□ -0.47
NDUFA4-202ENST00000463308 ZNF579Q8NAF0 562 aaKnown RBP12.12□□□□□ -0.47
NDUFA4-202ENST00000463308 POTEGQ6S5H5 508 aa12.1□□□□□ -0.47
NDUFA4-202ENST00000463308 ZBTB22O15209 634 aa12.06□□□□□ -0.48
NDUFA4-202ENST00000463308 ZRANB1Q9UGI0 708 aa12.01□□□□□ -0.49
NDUFA4-202ENST00000463308 POTEB2H3BUK9 544 aa11.97□□□□□ -0.49
NDUFA4-202ENST00000463308 GALR2O43603 387 aaPredicted RBP11.95□□□□□ -0.5
NDUFA4-202ENST00000463308 PAK3O75914 559 aaPredicted RBP11.85□□□□□ -0.51
NDUFA4-202ENST00000463308 MAMSTRQ6ZN01 415 aa11.83□□□□□ -0.52
NDUFA4-202ENST00000463308 CREBZFQ9NS37 354 aa11.79□□□□□ -0.52
NDUFA4-202ENST00000463308 PELP1Q8IZL8 1130 aaKnown RBP11.76□□□□□ -0.53
NDUFA4-202ENST00000463308 METRNQ9UJH8 293 aa11.76□□□□□ -0.53
NDUFA4-202ENST00000463308 C7P10643 843 aa11.75□□□□□ -0.53
NDUFA4-202ENST00000463308 SLC39A7Q92504 469 aa11.75□□□□□ -0.53
NDUFA4-202ENST00000463308 STAG3Q9UJ98 1225 aa11.75□□□□□ -0.53
NDUFA4-202ENST00000463308 PHF12Q96QT6 1004 aa11.73□□□□□ -0.53
NDUFA4-202ENST00000463308 ASTLQ6HA08 431 aaPredicted RBP11.72□□□□□ -0.53
NDUFA4-202ENST00000463308 LCE2DQ5TA82 110 aaPredicted RBP11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 89.6 ms