Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AC093010.1-201ENST00000473625 1624 ntBASIC17.58■□□□□ 0.41
USP39Q53GS9 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC17.58■□□□□ 0.41
USP39Q53GS9 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC17.58■□□□□ 0.41
USP39Q53GS9 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
USP39Q53GS9 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
USP39Q53GS9 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.41
USP39Q53GS9 FLJ13224-201ENST00000313737 1514 ntBASIC17.58■□□□□ 0.41
USP39Q53GS9 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC17.58■□□□□ 0.41
USP39Q53GS9 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
USP39Q53GS9 GPR89P-201ENST00000407924 1495 ntBASIC17.58■□□□□ 0.41
USP39Q53GS9 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
USP39Q53GS9 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
USP39Q53GS9 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
USP39Q53GS9 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
USP39Q53GS9 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
USP39Q53GS9 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC17.58■□□□□ 0.4
USP39Q53GS9 PNMT-202ENST00000394246 821 ntTSL 2 BASIC17.58■□□□□ 0.4
USP39Q53GS9 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC17.58■□□□□ 0.4
USP39Q53GS9 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC17.58■□□□□ 0.4
USP39Q53GS9 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC17.58■□□□□ 0.4
USP39Q53GS9 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC17.58■□□□□ 0.4
USP39Q53GS9 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC17.58■□□□□ 0.4
USP39Q53GS9 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
USP39Q53GS9 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
USP39Q53GS9 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
USP39Q53GS9 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
USP39Q53GS9 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
USP39Q53GS9 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
USP39Q53GS9 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
USP39Q53GS9 PHGDH-209ENST00000641074 1780 ntBASIC17.58■□□□□ 0.4
USP39Q53GS9 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
USP39Q53GS9 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
USP39Q53GS9 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC17.58■□□□□ 0.4
USP39Q53GS9 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
USP39Q53GS9 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.4
USP39Q53GS9 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
USP39Q53GS9 AP000997.3-201ENST00000623333 2250 ntBASIC17.58■□□□□ 0.4
USP39Q53GS9 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
USP39Q53GS9 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
USP39Q53GS9 AC134043.2-201ENST00000624206 2238 ntBASIC17.57■□□□□ 0.4
USP39Q53GS9 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC17.57■□□□□ 0.4
USP39Q53GS9 AL049757.1-201ENST00000616842 1596 ntBASIC17.57■□□□□ 0.4
USP39Q53GS9 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC17.57■□□□□ 0.4
USP39Q53GS9 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC17.57■□□□□ 0.4
USP39Q53GS9 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
USP39Q53GS9 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
USP39Q53GS9 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
USP39Q53GS9 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
USP39Q53GS9 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
USP39Q53GS9 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
USP39Q53GS9 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
USP39Q53GS9 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC17.57■□□□□ 0.4
USP39Q53GS9 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
USP39Q53GS9 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC17.57■□□□□ 0.4
USP39Q53GS9 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
USP39Q53GS9 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC17.57■□□□□ 0.4
USP39Q53GS9 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC17.57■□□□□ 0.4
USP39Q53GS9 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC17.57■□□□□ 0.4
USP39Q53GS9 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC17.57■□□□□ 0.4
USP39Q53GS9 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC17.57■□□□□ 0.4
USP39Q53GS9 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC17.57■□□□□ 0.4
USP39Q53GS9 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
USP39Q53GS9 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC17.57■□□□□ 0.4
USP39Q53GS9 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC17.57■□□□□ 0.4
USP39Q53GS9 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC17.57■□□□□ 0.4
USP39Q53GS9 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC17.57■□□□□ 0.4
USP39Q53GS9 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
USP39Q53GS9 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC17.57■□□□□ 0.4
USP39Q53GS9 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
USP39Q53GS9 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC17.57■□□□□ 0.4
USP39Q53GS9 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
USP39Q53GS9 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
USP39Q53GS9 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
USP39Q53GS9 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
USP39Q53GS9 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
USP39Q53GS9 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
USP39Q53GS9 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
USP39Q53GS9 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
USP39Q53GS9 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC17.57■□□□□ 0.4
USP39Q53GS9 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
USP39Q53GS9 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
USP39Q53GS9 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC17.57■□□□□ 0.4
USP39Q53GS9 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
USP39Q53GS9 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
USP39Q53GS9 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC17.56■□□□□ 0.4
USP39Q53GS9 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
USP39Q53GS9 GID4-202ENST00000376345 1391 ntTSL 3 BASIC17.56■□□□□ 0.4
USP39Q53GS9 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
USP39Q53GS9 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
USP39Q53GS9 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
USP39Q53GS9 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC17.56■□□□□ 0.4
USP39Q53GS9 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC17.56■□□□□ 0.4
USP39Q53GS9 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC17.56■□□□□ 0.4
USP39Q53GS9 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
USP39Q53GS9 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
USP39Q53GS9 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
USP39Q53GS9 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
USP39Q53GS9 MRPL20P1-201ENST00000400819 433 ntBASIC17.56■□□□□ 0.4
USP39Q53GS9 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC17.56■□□□□ 0.4
USP39Q53GS9 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC17.56■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms