Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
USP41Q3LFD5 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
USP41Q3LFD5 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC18.35■□□□□ 0.53
USP41Q3LFD5 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC18.35■□□□□ 0.53
USP41Q3LFD5 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC18.35■□□□□ 0.53
USP41Q3LFD5 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
USP41Q3LFD5 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC18.34■□□□□ 0.53
USP41Q3LFD5 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
USP41Q3LFD5 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
USP41Q3LFD5 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC18.34■□□□□ 0.53
USP41Q3LFD5 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC18.34■□□□□ 0.53
USP41Q3LFD5 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
USP41Q3LFD5 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC18.34■□□□□ 0.53
USP41Q3LFD5 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
USP41Q3LFD5 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC18.34■□□□□ 0.53
USP41Q3LFD5 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
USP41Q3LFD5 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
USP41Q3LFD5 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC18.34■□□□□ 0.53
USP41Q3LFD5 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
USP41Q3LFD5 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC18.34■□□□□ 0.53
USP41Q3LFD5 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
USP41Q3LFD5 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC18.34■□□□□ 0.53
USP41Q3LFD5 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC18.34■□□□□ 0.53
USP41Q3LFD5 HMGN1P19-201ENST00000436976 333 ntBASIC18.34■□□□□ 0.53
USP41Q3LFD5 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC18.34■□□□□ 0.53
USP41Q3LFD5 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC18.34■□□□□ 0.53
USP41Q3LFD5 MED16-214ENST00000617672 554 ntTSL 5 BASIC18.34■□□□□ 0.53
USP41Q3LFD5 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
USP41Q3LFD5 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC18.34■□□□□ 0.53
USP41Q3LFD5 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
USP41Q3LFD5 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
USP41Q3LFD5 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
USP41Q3LFD5 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
USP41Q3LFD5 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
USP41Q3LFD5 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
USP41Q3LFD5 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
USP41Q3LFD5 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
USP41Q3LFD5 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
USP41Q3LFD5 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.53
USP41Q3LFD5 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
USP41Q3LFD5 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
USP41Q3LFD5 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC18.33■□□□□ 0.53
USP41Q3LFD5 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC18.33■□□□□ 0.53
USP41Q3LFD5 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
USP41Q3LFD5 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
USP41Q3LFD5 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
USP41Q3LFD5 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC18.33■□□□□ 0.53
USP41Q3LFD5 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
USP41Q3LFD5 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
USP41Q3LFD5 DDT-204ENST00000404092 805 ntTSL 3 BASIC18.33■□□□□ 0.52
USP41Q3LFD5 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC18.33■□□□□ 0.52
USP41Q3LFD5 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
USP41Q3LFD5 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
USP41Q3LFD5 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
USP41Q3LFD5 PUS1-205ENST00000535067 838 ntTSL 3 BASIC18.33■□□□□ 0.52
USP41Q3LFD5 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
USP41Q3LFD5 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC18.33■□□□□ 0.52
USP41Q3LFD5 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
USP41Q3LFD5 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC18.33■□□□□ 0.52
USP41Q3LFD5 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC18.33■□□□□ 0.52
USP41Q3LFD5 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC18.33■□□□□ 0.52
USP41Q3LFD5 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
USP41Q3LFD5 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
USP41Q3LFD5 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC18.33■□□□□ 0.52
USP41Q3LFD5 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
USP41Q3LFD5 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
USP41Q3LFD5 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
USP41Q3LFD5 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
USP41Q3LFD5 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC18.32■□□□□ 0.52
USP41Q3LFD5 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
USP41Q3LFD5 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
USP41Q3LFD5 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC18.32■□□□□ 0.52
USP41Q3LFD5 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
USP41Q3LFD5 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
USP41Q3LFD5 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC18.32■□□□□ 0.52
USP41Q3LFD5 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC18.32■□□□□ 0.52
USP41Q3LFD5 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
USP41Q3LFD5 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
USP41Q3LFD5 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
USP41Q3LFD5 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC18.32■□□□□ 0.52
USP41Q3LFD5 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC18.32■□□□□ 0.52
USP41Q3LFD5 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
USP41Q3LFD5 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC18.32■□□□□ 0.52
USP41Q3LFD5 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC18.32■□□□□ 0.52
USP41Q3LFD5 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
USP41Q3LFD5 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC18.32■□□□□ 0.52
USP41Q3LFD5 AC068137.2-201ENST00000605408 478 ntBASIC18.32■□□□□ 0.52
USP41Q3LFD5 CITED2-204ENST00000618718 901 ntTSL 2 BASIC18.32■□□□□ 0.52
USP41Q3LFD5 AC091812.2-201ENST00000619081 385 ntBASIC18.32■□□□□ 0.52
USP41Q3LFD5 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
USP41Q3LFD5 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
USP41Q3LFD5 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC18.32■□□□□ 0.52
USP41Q3LFD5 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
USP41Q3LFD5 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC18.32■□□□□ 0.52
USP41Q3LFD5 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
USP41Q3LFD5 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC18.32■□□□□ 0.52
USP41Q3LFD5 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
USP41Q3LFD5 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
USP41Q3LFD5 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
USP41Q3LFD5 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 63.4 ms