Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
CHD9Q3L8U1 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
CHD9Q3L8U1 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
CHD9Q3L8U1 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
CHD9Q3L8U1 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CHD9Q3L8U1 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CHD9Q3L8U1 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC18.08■□□□□ 0.48
CHD9Q3L8U1 AC092552.1-201ENST00000547243 906 ntBASIC18.08■□□□□ 0.48
CHD9Q3L8U1 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC18.08■□□□□ 0.48
CHD9Q3L8U1 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
CHD9Q3L8U1 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC18.08■□□□□ 0.48
CHD9Q3L8U1 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC18.08■□□□□ 0.48
CHD9Q3L8U1 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CHD9Q3L8U1 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC18.07■□□□□ 0.48
CHD9Q3L8U1 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC18.07■□□□□ 0.48
CHD9Q3L8U1 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
CHD9Q3L8U1 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
CHD9Q3L8U1 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CHD9Q3L8U1 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC18.07■□□□□ 0.48
CHD9Q3L8U1 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC18.07■□□□□ 0.48
CHD9Q3L8U1 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CHD9Q3L8U1 MYCLP1-201ENST00000372451 1075 ntBASIC18.07■□□□□ 0.48
CHD9Q3L8U1 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC18.07■□□□□ 0.48
CHD9Q3L8U1 INE1-201ENST00000456273 945 ntBASIC18.07■□□□□ 0.48
CHD9Q3L8U1 SATB1-217ENST00000493952 626 ntTSL 3 BASIC18.07■□□□□ 0.48
CHD9Q3L8U1 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC18.07■□□□□ 0.48
CHD9Q3L8U1 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC18.07■□□□□ 0.48
CHD9Q3L8U1 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC18.07■□□□□ 0.48
CHD9Q3L8U1 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC18.07■□□□□ 0.48
CHD9Q3L8U1 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
CHD9Q3L8U1 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC18.07■□□□□ 0.48
CHD9Q3L8U1 LINC00896-202ENST00000609602 2128 ntBASIC18.07■□□□□ 0.48
CHD9Q3L8U1 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC18.07■□□□□ 0.48
CHD9Q3L8U1 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC18.07■□□□□ 0.48
CHD9Q3L8U1 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CHD9Q3L8U1 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
CHD9Q3L8U1 STX3-203ENST00000529177 1571 ntTSL 2 BASIC18.07■□□□□ 0.48
CHD9Q3L8U1 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CHD9Q3L8U1 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
CHD9Q3L8U1 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CHD9Q3L8U1 AC104794.3-201ENST00000566840 1248 ntBASIC18.07■□□□□ 0.48
CHD9Q3L8U1 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CHD9Q3L8U1 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
CHD9Q3L8U1 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CHD9Q3L8U1 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
CHD9Q3L8U1 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC18.06■□□□□ 0.48
CHD9Q3L8U1 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC18.06■□□□□ 0.48
CHD9Q3L8U1 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC18.06■□□□□ 0.48
CHD9Q3L8U1 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC18.06■□□□□ 0.48
CHD9Q3L8U1 SLC22A20-204ENST00000530038 1673 ntBASIC18.06■□□□□ 0.48
CHD9Q3L8U1 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC18.06■□□□□ 0.48
CHD9Q3L8U1 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC18.06■□□□□ 0.48
CHD9Q3L8U1 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CHD9Q3L8U1 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC18.06■□□□□ 0.48
CHD9Q3L8U1 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CHD9Q3L8U1 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC18.06■□□□□ 0.48
CHD9Q3L8U1 MIR3909-201ENST00000579518 119 ntBASIC18.06■□□□□ 0.48
CHD9Q3L8U1 AC008738.7-201ENST00000609744 511 ntBASIC18.06■□□□□ 0.48
CHD9Q3L8U1 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
CHD9Q3L8U1 AC104581.1-202ENST00000635932 2618 ntBASIC18.06■□□□□ 0.48
CHD9Q3L8U1 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CHD9Q3L8U1 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC18.06■□□□□ 0.48
CHD9Q3L8U1 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
CHD9Q3L8U1 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
CHD9Q3L8U1 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
CHD9Q3L8U1 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
CHD9Q3L8U1 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CHD9Q3L8U1 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC18.06■□□□□ 0.48
CHD9Q3L8U1 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CHD9Q3L8U1 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CHD9Q3L8U1 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CHD9Q3L8U1 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CHD9Q3L8U1 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC18.06■□□□□ 0.48
CHD9Q3L8U1 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
CHD9Q3L8U1 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC18.06■□□□□ 0.48
CHD9Q3L8U1 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
CHD9Q3L8U1 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC18.06■□□□□ 0.48
CHD9Q3L8U1 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC18.06■□□□□ 0.48
CHD9Q3L8U1 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC18.06■□□□□ 0.48
CHD9Q3L8U1 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC18.06■□□□□ 0.48
CHD9Q3L8U1 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
CHD9Q3L8U1 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
CHD9Q3L8U1 RNA5-8SN1-201ENST00000610460 153 ntBASIC18.06■□□□□ 0.48
CHD9Q3L8U1 RNA5-8SN5-202ENST00000612463 153 ntBASIC18.06■□□□□ 0.48
CHD9Q3L8U1 RNA5-8SN4-201ENST00000613359 153 ntBASIC18.06■□□□□ 0.48
CHD9Q3L8U1 RNA5-8SN5-201ENST00000619471 153 ntBASIC18.06■□□□□ 0.48
CHD9Q3L8U1 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CHD9Q3L8U1 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CHD9Q3L8U1 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC18.06■□□□□ 0.48
CHD9Q3L8U1 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
CHD9Q3L8U1 AL391825.1-201ENST00000457671 1364 ntBASIC18.06■□□□□ 0.48
CHD9Q3L8U1 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CHD9Q3L8U1 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC18.06■□□□□ 0.48
CHD9Q3L8U1 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CHD9Q3L8U1 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CHD9Q3L8U1 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CHD9Q3L8U1 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC18.05■□□□□ 0.48
CHD9Q3L8U1 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC18.05■□□□□ 0.48
CHD9Q3L8U1 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC18.05■□□□□ 0.48
CHD9Q3L8U1 AC018529.1-201ENST00000613063 361 ntBASIC18.05■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms