Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
HDAC4P56524 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.49
HDAC4P56524 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC18.08■□□□□ 0.49
HDAC4P56524 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
HDAC4P56524 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.48
HDAC4P56524 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
HDAC4P56524 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
HDAC4P56524 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
HDAC4P56524 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC18.08■□□□□ 0.48
HDAC4P56524 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC18.08■□□□□ 0.48
HDAC4P56524 SIGLEC30P-201ENST00000455569 941 ntBASIC18.08■□□□□ 0.48
HDAC4P56524 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC18.08■□□□□ 0.48
HDAC4P56524 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC18.08■□□□□ 0.48
HDAC4P56524 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC18.08■□□□□ 0.48
HDAC4P56524 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC18.08■□□□□ 0.48
HDAC4P56524 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
HDAC4P56524 AL355877.3-201ENST00000622820 899 ntBASIC18.08■□□□□ 0.48
HDAC4P56524 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
HDAC4P56524 AC099398.1-201ENST00000567919 2776 ntBASIC18.08■□□□□ 0.48
HDAC4P56524 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
HDAC4P56524 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
HDAC4P56524 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
HDAC4P56524 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC18.08■□□□□ 0.48
HDAC4P56524 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC18.08■□□□□ 0.48
HDAC4P56524 RHBDF1P1-201ENST00000427504 1941 ntBASIC18.08■□□□□ 0.48
HDAC4P56524 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
HDAC4P56524 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
HDAC4P56524 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC18.08■□□□□ 0.48
HDAC4P56524 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
HDAC4P56524 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC18.07■□□□□ 0.48
HDAC4P56524 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC18.07■□□□□ 0.48
HDAC4P56524 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC18.07■□□□□ 0.48
HDAC4P56524 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
HDAC4P56524 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
HDAC4P56524 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
HDAC4P56524 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
HDAC4P56524 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC18.07■□□□□ 0.48
HDAC4P56524 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
HDAC4P56524 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HDAC4P56524 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HDAC4P56524 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC18.07■□□□□ 0.48
HDAC4P56524 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HDAC4P56524 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
HDAC4P56524 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC18.07■□□□□ 0.48
HDAC4P56524 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC18.07■□□□□ 0.48
HDAC4P56524 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
HDAC4P56524 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC18.07■□□□□ 0.48
HDAC4P56524 MTDHP3-201ENST00000594186 672 ntBASIC18.07■□□□□ 0.48
HDAC4P56524 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
HDAC4P56524 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
HDAC4P56524 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC18.07■□□□□ 0.48
HDAC4P56524 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC18.07■□□□□ 0.48
HDAC4P56524 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC18.07■□□□□ 0.48
HDAC4P56524 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC18.07■□□□□ 0.48
HDAC4P56524 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HDAC4P56524 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
HDAC4P56524 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC18.07■□□□□ 0.48
HDAC4P56524 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
HDAC4P56524 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC18.07■□□□□ 0.48
HDAC4P56524 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
HDAC4P56524 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HDAC4P56524 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
HDAC4P56524 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
HDAC4P56524 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC18.07■□□□□ 0.48
HDAC4P56524 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
HDAC4P56524 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HDAC4P56524 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC18.06■□□□□ 0.48
HDAC4P56524 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HDAC4P56524 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
HDAC4P56524 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
HDAC4P56524 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
HDAC4P56524 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
HDAC4P56524 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HDAC4P56524 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
HDAC4P56524 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HDAC4P56524 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC18.06■□□□□ 0.48
HDAC4P56524 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HDAC4P56524 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HDAC4P56524 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
HDAC4P56524 FGFR3P6-201ENST00000457012 610 ntBASIC18.06■□□□□ 0.48
HDAC4P56524 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC18.06■□□□□ 0.48
HDAC4P56524 AF238378.1-201ENST00000526806 358 ntBASIC18.06■□□□□ 0.48
HDAC4P56524 TOLLIP-AS1-201ENST00000530897 939 ntBASIC18.06■□□□□ 0.48
HDAC4P56524 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
HDAC4P56524 COX5A-202ENST00000562233 441 ntTSL 3 BASIC18.06■□□□□ 0.48
HDAC4P56524 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC18.06■□□□□ 0.48
HDAC4P56524 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
HDAC4P56524 CYB561-217ENST00000582997 877 ntTSL 5 BASIC18.06■□□□□ 0.48
HDAC4P56524 COPE-211ENST00000600932 1144 ntTSL 5 BASIC18.06■□□□□ 0.48
HDAC4P56524 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
HDAC4P56524 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
HDAC4P56524 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC18.06■□□□□ 0.48
HDAC4P56524 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC18.06■□□□□ 0.48
HDAC4P56524 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
HDAC4P56524 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
HDAC4P56524 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC18.06■□□□□ 0.48
HDAC4P56524 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HDAC4P56524 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
HDAC4P56524 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC18.06■□□□□ 0.48
HDAC4P56524 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms