Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 INO80C-206ENST00000586489 594 ntTSL 3 BASIC21.29■■□□□ 1
NUP98P52948 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
NUP98P52948 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC21.29■■□□□ 1
NUP98P52948 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC21.29■■□□□ 1
NUP98P52948 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
NUP98P52948 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC21.29■■□□□ 1
NUP98P52948 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
NUP98P52948 TPR-209ENST00000613151 2478 ntTSL 5 BASIC21.29■■□□□ 1
NUP98P52948 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
NUP98P52948 FRMD8P1-201ENST00000440433 1524 ntBASIC21.29■■□□□ 1
NUP98P52948 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC21.29■■□□□ 1
NUP98P52948 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
NUP98P52948 MIR661-201ENST00000384842 89 ntBASIC21.29■■□□□ 1
NUP98P52948 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC21.29■■□□□ 1
NUP98P52948 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC21.29■■□□□ 1
NUP98P52948 PMS2P4-201ENST00000412466 1052 ntBASIC21.29■■□□□ 1
NUP98P52948 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
NUP98P52948 DUX4L27-201ENST00000554796 1261 ntBASIC21.29■■□□□ 1
NUP98P52948 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC21.29■■□□□ 1
NUP98P52948 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC21.29■■□□□ 1
NUP98P52948 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC21.29■■□□□ 1
NUP98P52948 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC21.29■■□□□ 1
NUP98P52948 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC21.28■■□□□ 1
NUP98P52948 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC21.28■■□□□ 1
NUP98P52948 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC21.28■■□□□ 1
NUP98P52948 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC21.28■■□□□ 1
NUP98P52948 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
NUP98P52948 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC21.28■■□□□ 1
NUP98P52948 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC21.28■■□□□ 1
NUP98P52948 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC21.28■■□□□ 1
NUP98P52948 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC21.28■■□□□ 1
NUP98P52948 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC21.28■■□□□ 1
NUP98P52948 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC21.28■■□□□ 1
NUP98P52948 HLA-DRB6-201ENST00000411500 1235 ntBASIC21.28■■□□□ 1
NUP98P52948 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC21.28■■□□□ 1
NUP98P52948 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC21.28■■□□□ 1
NUP98P52948 AC093525.9-201ENST00000624961 1746 ntBASIC21.28■■□□□ 1
NUP98P52948 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC21.28■■□□□ 1
NUP98P52948 FOXO1B-201ENST00000504678 1527 ntBASIC21.28■■□□□ 1
NUP98P52948 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
NUP98P52948 AC016396.2-201ENST00000562575 1417 ntBASIC21.28■■□□□ 1
NUP98P52948 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
NUP98P52948 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC21.28■■□□□ 1
NUP98P52948 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
NUP98P52948 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC21.28■■□□□ 1
NUP98P52948 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC21.28■■□□□ 1
NUP98P52948 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC21.28■■□□□ 1
NUP98P52948 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
NUP98P52948 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
NUP98P52948 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
NUP98P52948 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
NUP98P52948 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
NUP98P52948 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
NUP98P52948 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC21.27■■□□□ 1
NUP98P52948 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
NUP98P52948 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
NUP98P52948 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC21.27■■□□□ 1
NUP98P52948 KLF2P3-201ENST00000451977 1087 ntBASIC21.27■■□□□ 1
NUP98P52948 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC21.27■■□□□ 1
NUP98P52948 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC21.27■■□□□ 1
NUP98P52948 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
NUP98P52948 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC21.27■■□□□ 1
NUP98P52948 RAB34-224ENST00000636513 888 ntTSL 5 BASIC21.27■■□□□ 1
NUP98P52948 UXT-AS1-201ENST00000590504 1525 ntBASIC21.27■■□□□ 1
NUP98P52948 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC21.27■■□□□ 1
NUP98P52948 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
NUP98P52948 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
NUP98P52948 AC008677.1-201ENST00000519230 1561 ntBASIC21.27■■□□□ 1
NUP98P52948 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC21.27■■□□□ 1
NUP98P52948 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC21.27■■□□□ 1
NUP98P52948 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC21.27■■□□□ 1
NUP98P52948 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
NUP98P52948 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■□□□□ 0.99
NUP98P52948 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC21.27■□□□□ 0.99
NUP98P52948 BAD-202ENST00000394531 631 ntTSL 3 BASIC21.27■□□□□ 0.99
NUP98P52948 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
NUP98P52948 RBPMS2P1-201ENST00000437762 623 ntBASIC21.27■□□□□ 0.99
NUP98P52948 AC109635.5-201ENST00000533593 962 ntBASIC21.27■□□□□ 0.99
NUP98P52948 BAD-207ENST00000544785 525 ntTSL 3 BASIC21.27■□□□□ 0.99
NUP98P52948 AC091167.2-201ENST00000579581 588 ntBASIC21.27■□□□□ 0.99
NUP98P52948 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC21.27■□□□□ 0.99
NUP98P52948 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
NUP98P52948 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
NUP98P52948 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC21.26■□□□□ 0.99
NUP98P52948 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
NUP98P52948 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
NUP98P52948 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
NUP98P52948 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC21.26■□□□□ 0.99
NUP98P52948 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
NUP98P52948 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
NUP98P52948 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
NUP98P52948 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC21.26■□□□□ 0.99
NUP98P52948 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC21.26■□□□□ 0.99
NUP98P52948 CCDC74BP1-201ENST00000508880 1123 ntBASIC21.26■□□□□ 0.99
NUP98P52948 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
NUP98P52948 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC21.26■□□□□ 0.99
NUP98P52948 AP000842.3-202ENST00000569238 1080 ntBASIC21.26■□□□□ 0.99
NUP98P52948 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
NUP98P52948 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
NUP98P52948 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 47.1 ms