Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 KRT223P-202ENST00000449164 1292 ntBASIC20.73■□□□□ 0.91
BRCA1P38398 TBC1D16-205ENST00000572862 1141 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
BRCA1P38398 AL139327.4-201ENST00000612362 153 ntBASIC20.73■□□□□ 0.91
BRCA1P38398 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
BRCA1P38398 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
BRCA1P38398 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
BRCA1P38398 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
BRCA1P38398 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
BRCA1P38398 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
BRCA1P38398 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
BRCA1P38398 LINC00895-201ENST00000629028 1637 ntBASIC20.73■□□□□ 0.91
BRCA1P38398 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC20.73■□□□□ 0.91
BRCA1P38398 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC20.73■□□□□ 0.91
BRCA1P38398 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
BRCA1P38398 RASL12-203ENST00000434605 982 ntTSL 2 BASIC20.73■□□□□ 0.91
BRCA1P38398 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC20.73■□□□□ 0.91
BRCA1P38398 MIR4259-201ENST00000584466 101 ntBASIC20.73■□□□□ 0.91
BRCA1P38398 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
BRCA1P38398 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC20.73■□□□□ 0.91
BRCA1P38398 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC20.72■□□□□ 0.91
BRCA1P38398 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
BRCA1P38398 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
BRCA1P38398 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
BRCA1P38398 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
BRCA1P38398 LINC00304-203ENST00000565008 1864 ntBASIC20.72■□□□□ 0.91
BRCA1P38398 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
BRCA1P38398 BTBD7P1-201ENST00000447253 1453 ntBASIC20.72■□□□□ 0.91
BRCA1P38398 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
BRCA1P38398 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
BRCA1P38398 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
BRCA1P38398 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC20.72■□□□□ 0.91
BRCA1P38398 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
BRCA1P38398 AL512361.1-201ENST00000554200 418 ntBASIC20.72■□□□□ 0.91
BRCA1P38398 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC20.72■□□□□ 0.91
BRCA1P38398 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
BRCA1P38398 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC20.72■□□□□ 0.91
BRCA1P38398 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
BRCA1P38398 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
BRCA1P38398 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC20.72■□□□□ 0.91
BRCA1P38398 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC20.72■□□□□ 0.91
BRCA1P38398 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
BRCA1P38398 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
BRCA1P38398 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
BRCA1P38398 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC20.71■□□□□ 0.91
BRCA1P38398 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
BRCA1P38398 RPL37AP1-201ENST00000412502 279 ntBASIC20.71■□□□□ 0.91
BRCA1P38398 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC20.71■□□□□ 0.91
BRCA1P38398 PRYP6-201ENST00000514804 343 ntBASIC20.71■□□□□ 0.91
BRCA1P38398 AC091167.2-201ENST00000579581 588 ntBASIC20.71■□□□□ 0.91
BRCA1P38398 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC20.71■□□□□ 0.91
BRCA1P38398 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC20.71■□□□□ 0.91
BRCA1P38398 AC008735.3-201ENST00000596646 500 ntBASIC20.71■□□□□ 0.91
BRCA1P38398 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC20.71■□□□□ 0.91
BRCA1P38398 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC20.71■□□□□ 0.91
BRCA1P38398 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
BRCA1P38398 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
BRCA1P38398 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
BRCA1P38398 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
BRCA1P38398 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC20.71■□□□□ 0.91
BRCA1P38398 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC20.71■□□□□ 0.91
BRCA1P38398 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
BRCA1P38398 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
BRCA1P38398 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC20.71■□□□□ 0.91
BRCA1P38398 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC20.71■□□□□ 0.91
BRCA1P38398 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
BRCA1P38398 HLA-H-201ENST00000383620 1096 ntBASIC20.71■□□□□ 0.91
BRCA1P38398 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
BRCA1P38398 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC20.71■□□□□ 0.91
BRCA1P38398 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
BRCA1P38398 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC20.71■□□□□ 0.91
BRCA1P38398 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC20.71■□□□□ 0.91
BRCA1P38398 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
BRCA1P38398 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
BRCA1P38398 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC20.7■□□□□ 0.91
BRCA1P38398 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
BRCA1P38398 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC20.7■□□□□ 0.9
BRCA1P38398 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC20.7■□□□□ 0.9
BRCA1P38398 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC20.7■□□□□ 0.9
BRCA1P38398 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
BRCA1P38398 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.9
BRCA1P38398 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
BRCA1P38398 ANKRD19P-201ENST00000338192 862 ntBASIC20.7■□□□□ 0.9
BRCA1P38398 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
BRCA1P38398 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
BRCA1P38398 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
BRCA1P38398 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC20.7■□□□□ 0.9
BRCA1P38398 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC20.7■□□□□ 0.9
BRCA1P38398 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC20.7■□□□□ 0.9
BRCA1P38398 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
BRCA1P38398 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
BRCA1P38398 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC20.7■□□□□ 0.9
BRCA1P38398 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC20.7■□□□□ 0.9
BRCA1P38398 KRT18P55-202ENST00000578578 1546 ntBASIC20.69■□□□□ 0.9
BRCA1P38398 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
BRCA1P38398 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
BRCA1P38398 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC20.69■□□□□ 0.9
BRCA1P38398 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
BRCA1P38398 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
BRCA1P38398 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
BRCA1P38398 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC20.69■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms