Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC17.67■□□□□ 0.42
COL9A1P20849 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL9A1P20849 MTND4LP12-201ENST00000448237 295 ntBASIC17.67■□□□□ 0.42
COL9A1P20849 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC17.67■□□□□ 0.42
COL9A1P20849 LYRM4-206ENST00000468929 1168 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
COL9A1P20849 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
COL9A1P20849 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL9A1P20849 AC079140.1-201ENST00000508039 487 ntBASIC17.67■□□□□ 0.42
COL9A1P20849 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC17.67■□□□□ 0.42
COL9A1P20849 AC026150.2-201ENST00000564693 1156 ntBASIC17.67■□□□□ 0.42
COL9A1P20849 AC104794.3-201ENST00000566840 1248 ntBASIC17.67■□□□□ 0.42
COL9A1P20849 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC17.67■□□□□ 0.42
COL9A1P20849 STK25P1-201ENST00000585406 838 ntBASIC17.67■□□□□ 0.42
COL9A1P20849 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC17.67■□□□□ 0.42
COL9A1P20849 PPA1-206ENST00000625364 644 ntTSL 5 BASIC17.67■□□□□ 0.42
COL9A1P20849 RAB34-224ENST00000636513 888 ntTSL 5 BASIC17.67■□□□□ 0.42
COL9A1P20849 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
COL9A1P20849 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL9A1P20849 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL9A1P20849 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
COL9A1P20849 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
COL9A1P20849 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL9A1P20849 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
COL9A1P20849 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC17.67■□□□□ 0.42
COL9A1P20849 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC17.66■□□□□ 0.42
COL9A1P20849 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL9A1P20849 EFTUD1P1-204ENST00000560401 1798 ntBASIC17.66■□□□□ 0.42
COL9A1P20849 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC17.66■□□□□ 0.42
COL9A1P20849 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC17.66■□□□□ 0.42
COL9A1P20849 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL9A1P20849 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
COL9A1P20849 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
COL9A1P20849 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC17.66■□□□□ 0.42
COL9A1P20849 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
COL9A1P20849 AC002056.1-201ENST00000395613 760 ntBASIC17.66■□□□□ 0.42
COL9A1P20849 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL9A1P20849 PPP6R2P1-201ENST00000450880 1275 ntBASIC17.66■□□□□ 0.42
COL9A1P20849 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC17.66■□□□□ 0.42
COL9A1P20849 AC011495.1-201ENST00000498085 584 ntBASIC17.66■□□□□ 0.42
COL9A1P20849 AC119751.2-201ENST00000504529 210 ntBASIC17.66■□□□□ 0.42
COL9A1P20849 STK19B-204ENST00000512515 211 ntBASIC17.66■□□□□ 0.42
COL9A1P20849 GLI4-203ENST00000517468 963 ntTSL 5 BASIC17.66■□□□□ 0.42
COL9A1P20849 AL133523.1-201ENST00000554537 331 ntTSL 3 BASIC17.66■□□□□ 0.42
COL9A1P20849 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC17.66■□□□□ 0.42
COL9A1P20849 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC17.66■□□□□ 0.42
COL9A1P20849 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC17.66■□□□□ 0.42
COL9A1P20849 AL512343.1-201ENST00000605837 169 ntBASIC17.66■□□□□ 0.42
COL9A1P20849 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC17.66■□□□□ 0.42
COL9A1P20849 AL109936.8-201ENST00000641772 604 ntBASIC17.66■□□□□ 0.42
COL9A1P20849 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL9A1P20849 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL9A1P20849 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC17.66■□□□□ 0.42
COL9A1P20849 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL9A1P20849 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL9A1P20849 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
COL9A1P20849 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL9A1P20849 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC17.66■□□□□ 0.42
COL9A1P20849 HARS-201ENST00000307633 1780 ntTSL 2 BASIC17.66■□□□□ 0.42
COL9A1P20849 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC17.66■□□□□ 0.42
COL9A1P20849 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC17.66■□□□□ 0.42
COL9A1P20849 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL9A1P20849 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL9A1P20849 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL9A1P20849 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC17.65■□□□□ 0.42
COL9A1P20849 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC17.65■□□□□ 0.42
COL9A1P20849 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC17.65■□□□□ 0.42
COL9A1P20849 REXO1L9P-201ENST00000604264 2108 ntBASIC17.65■□□□□ 0.42
COL9A1P20849 AC093503.3-201ENST00000624917 2352 ntBASIC17.65■□□□□ 0.42
COL9A1P20849 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
COL9A1P20849 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC17.65■□□□□ 0.42
COL9A1P20849 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL9A1P20849 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL9A1P20849 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC17.65■□□□□ 0.42
COL9A1P20849 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC17.65■□□□□ 0.42
COL9A1P20849 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC17.65■□□□□ 0.42
COL9A1P20849 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC17.65■□□□□ 0.42
COL9A1P20849 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC17.65■□□□□ 0.42
COL9A1P20849 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL9A1P20849 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
COL9A1P20849 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC17.65■□□□□ 0.42
COL9A1P20849 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC17.65■□□□□ 0.42
COL9A1P20849 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC17.65■□□□□ 0.42
COL9A1P20849 APOC4-201ENST00000591600 348 ntTSL 3 BASIC17.65■□□□□ 0.42
COL9A1P20849 BX276092.7-203ENST00000637198 1536 ntBASIC17.65■□□□□ 0.42
COL9A1P20849 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL9A1P20849 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL9A1P20849 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL9A1P20849 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC17.65■□□□□ 0.42
COL9A1P20849 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC17.65■□□□□ 0.42
COL9A1P20849 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC17.65■□□□□ 0.42
COL9A1P20849 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
COL9A1P20849 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC17.65■□□□□ 0.42
COL9A1P20849 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC17.65■□□□□ 0.42
COL9A1P20849 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
COL9A1P20849 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
COL9A1P20849 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC17.65■□□□□ 0.42
COL9A1P20849 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
COL9A1P20849 SH3GLB2-205ENST00000416629 1415 ntTSL 5 BASIC17.64■□□□□ 0.42
COL9A1P20849 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC17.64■□□□□ 0.42
COL9A1P20849 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms