Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
XRCC1P18887 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
XRCC1P18887 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC17.28■□□□□ 0.36
XRCC1P18887 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
XRCC1P18887 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
XRCC1P18887 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC17.28■□□□□ 0.36
XRCC1P18887 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
XRCC1P18887 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
XRCC1P18887 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
XRCC1P18887 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC17.28■□□□□ 0.36
XRCC1P18887 AC010460.3-201ENST00000511359 1579 ntBASIC17.28■□□□□ 0.36
XRCC1P18887 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
XRCC1P18887 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
XRCC1P18887 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC17.28■□□□□ 0.36
XRCC1P18887 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
XRCC1P18887 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
XRCC1P18887 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
XRCC1P18887 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC17.28■□□□□ 0.36
XRCC1P18887 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
XRCC1P18887 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
XRCC1P18887 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
XRCC1P18887 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
XRCC1P18887 COX5BP2-201ENST00000392354 334 ntBASIC17.28■□□□□ 0.36
XRCC1P18887 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
XRCC1P18887 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC17.28■□□□□ 0.36
XRCC1P18887 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC17.28■□□□□ 0.36
XRCC1P18887 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC17.28■□□□□ 0.36
XRCC1P18887 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
XRCC1P18887 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
XRCC1P18887 MTDHP3-201ENST00000594186 672 ntBASIC17.28■□□□□ 0.36
XRCC1P18887 AC116407.2-201ENST00000613639 860 ntBASIC17.28■□□□□ 0.36
XRCC1P18887 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC17.28■□□□□ 0.36
XRCC1P18887 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
XRCC1P18887 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
XRCC1P18887 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
XRCC1P18887 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC17.28■□□□□ 0.36
XRCC1P18887 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC17.28■□□□□ 0.36
XRCC1P18887 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC17.28■□□□□ 0.36
XRCC1P18887 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC17.28■□□□□ 0.36
XRCC1P18887 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
XRCC1P18887 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
XRCC1P18887 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
XRCC1P18887 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
XRCC1P18887 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
XRCC1P18887 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
XRCC1P18887 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
XRCC1P18887 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC17.28■□□□□ 0.36
XRCC1P18887 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
XRCC1P18887 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
XRCC1P18887 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC17.28■□□□□ 0.36
XRCC1P18887 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
XRCC1P18887 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
XRCC1P18887 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC17.27■□□□□ 0.36
XRCC1P18887 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC17.27■□□□□ 0.36
XRCC1P18887 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
XRCC1P18887 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
XRCC1P18887 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC17.27■□□□□ 0.36
XRCC1P18887 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
XRCC1P18887 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC17.27■□□□□ 0.36
XRCC1P18887 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC17.27■□□□□ 0.36
XRCC1P18887 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
XRCC1P18887 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
XRCC1P18887 MED29-202ENST00000594368 1471 ntTSL 2 BASIC17.27■□□□□ 0.36
XRCC1P18887 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
XRCC1P18887 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC17.27■□□□□ 0.36
XRCC1P18887 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
XRCC1P18887 SOD2-201ENST00000337404 991 ntTSL 2 BASIC17.27■□□□□ 0.36
XRCC1P18887 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
XRCC1P18887 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC17.27■□□□□ 0.36
XRCC1P18887 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC17.27■□□□□ 0.36
XRCC1P18887 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC17.27■□□□□ 0.36
XRCC1P18887 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
XRCC1P18887 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC17.27■□□□□ 0.36
XRCC1P18887 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
XRCC1P18887 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC17.27■□□□□ 0.36
XRCC1P18887 SRP19-202ENST00000445150 833 ntTSL 2 BASIC17.27■□□□□ 0.36
XRCC1P18887 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC17.27■□□□□ 0.36
XRCC1P18887 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC17.27■□□□□ 0.36
XRCC1P18887 SLC25A6P4-201ENST00000586535 553 ntBASIC17.27■□□□□ 0.36
XRCC1P18887 AC064862.7-201ENST00000604520 867 ntBASIC17.27■□□□□ 0.36
XRCC1P18887 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC17.27■□□□□ 0.36
XRCC1P18887 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
XRCC1P18887 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.36
XRCC1P18887 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
XRCC1P18887 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC17.27■□□□□ 0.35
XRCC1P18887 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
XRCC1P18887 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC17.27■□□□□ 0.35
XRCC1P18887 AL138688.1-201ENST00000624851 1594 ntBASIC17.27■□□□□ 0.35
XRCC1P18887 PAN3-AS1-201ENST00000563843 1351 ntBASIC17.27■□□□□ 0.35
XRCC1P18887 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
XRCC1P18887 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
XRCC1P18887 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
XRCC1P18887 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
XRCC1P18887 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC17.26■□□□□ 0.35
XRCC1P18887 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
XRCC1P18887 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC17.26■□□□□ 0.35
XRCC1P18887 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
XRCC1P18887 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC17.26■□□□□ 0.35
XRCC1P18887 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
XRCC1P18887 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms