Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC20.93■□□□□ 0.94
COL4A1P02462 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
COL4A1P02462 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
COL4A1P02462 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC20.93■□□□□ 0.94
COL4A1P02462 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
COL4A1P02462 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
COL4A1P02462 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
COL4A1P02462 FAM86GP-201ENST00000448322 971 ntBASIC20.93■□□□□ 0.94
COL4A1P02462 RN7SL589P-201ENST00000481268 310 ntBASIC20.93■□□□□ 0.94
COL4A1P02462 AC093214.1-201ENST00000511688 1107 ntBASIC20.93■□□□□ 0.94
COL4A1P02462 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC20.93■□□□□ 0.94
COL4A1P02462 AC005412.3-201ENST00000580309 715 ntBASIC20.93■□□□□ 0.94
COL4A1P02462 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
COL4A1P02462 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC20.92■□□□□ 0.94
COL4A1P02462 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
COL4A1P02462 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC20.92■□□□□ 0.94
COL4A1P02462 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC20.92■□□□□ 0.94
COL4A1P02462 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
COL4A1P02462 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
COL4A1P02462 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
COL4A1P02462 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
COL4A1P02462 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
COL4A1P02462 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
COL4A1P02462 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
COL4A1P02462 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC20.92■□□□□ 0.94
COL4A1P02462 AL031055.1-201ENST00000606362 631 ntBASIC20.92■□□□□ 0.94
COL4A1P02462 BSG-214ENST00000614867 960 ntTSL 3 BASIC20.92■□□□□ 0.94
COL4A1P02462 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
COL4A1P02462 AC116353.5-201ENST00000638148 1699 ntBASIC20.92■□□□□ 0.94
COL4A1P02462 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
COL4A1P02462 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC20.92■□□□□ 0.94
COL4A1P02462 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC20.92■□□□□ 0.94
COL4A1P02462 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC20.92■□□□□ 0.94
COL4A1P02462 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
COL4A1P02462 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
COL4A1P02462 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC20.91■□□□□ 0.94
COL4A1P02462 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC20.91■□□□□ 0.94
COL4A1P02462 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
COL4A1P02462 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
COL4A1P02462 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
COL4A1P02462 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
COL4A1P02462 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC20.91■□□□□ 0.94
COL4A1P02462 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
COL4A1P02462 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
COL4A1P02462 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
COL4A1P02462 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
COL4A1P02462 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
COL4A1P02462 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC20.91■□□□□ 0.94
COL4A1P02462 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
COL4A1P02462 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
COL4A1P02462 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
COL4A1P02462 AL390961.4-201ENST00000623958 2535 ntBASIC20.91■□□□□ 0.94
COL4A1P02462 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
COL4A1P02462 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
COL4A1P02462 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
COL4A1P02462 FOXO1B-201ENST00000504678 1527 ntBASIC20.91■□□□□ 0.94
COL4A1P02462 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
COL4A1P02462 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC20.9■□□□□ 0.94
COL4A1P02462 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
COL4A1P02462 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
COL4A1P02462 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
COL4A1P02462 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC20.9■□□□□ 0.94
COL4A1P02462 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
COL4A1P02462 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC20.9■□□□□ 0.94
COL4A1P02462 SSH2-211ENST00000590153 570 ntTSL 4 BASIC20.9■□□□□ 0.94
COL4A1P02462 AC092364.2-202ENST00000597012 1073 ntBASIC20.9■□□□□ 0.94
COL4A1P02462 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC20.9■□□□□ 0.94
COL4A1P02462 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC20.9■□□□□ 0.94
COL4A1P02462 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC20.9■□□□□ 0.94
COL4A1P02462 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
COL4A1P02462 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
COL4A1P02462 AKAP8P1-201ENST00000434743 1349 ntBASIC20.9■□□□□ 0.94
COL4A1P02462 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC20.9■□□□□ 0.94
COL4A1P02462 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
COL4A1P02462 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC20.9■□□□□ 0.94
COL4A1P02462 AC008677.1-201ENST00000519230 1561 ntBASIC20.9■□□□□ 0.94
COL4A1P02462 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC20.89■□□□□ 0.94
COL4A1P02462 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC20.89■□□□□ 0.94
COL4A1P02462 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC20.89■□□□□ 0.94
COL4A1P02462 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC20.89■□□□□ 0.94
COL4A1P02462 AC084121.4-201ENST00000641598 221 ntBASIC20.89■□□□□ 0.94
COL4A1P02462 AF228730.8-201ENST00000642140 221 ntBASIC20.89■□□□□ 0.94
COL4A1P02462 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC20.89■□□□□ 0.94
COL4A1P02462 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
COL4A1P02462 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
COL4A1P02462 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC20.89■□□□□ 0.94
COL4A1P02462 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
COL4A1P02462 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
COL4A1P02462 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC20.89■□□□□ 0.93
COL4A1P02462 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC20.89■□□□□ 0.93
COL4A1P02462 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
COL4A1P02462 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
COL4A1P02462 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
COL4A1P02462 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
COL4A1P02462 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
COL4A1P02462 NARF-206ENST00000457415 1668 ntTSL 5 BASIC20.89■□□□□ 0.93
COL4A1P02462 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC20.89■□□□□ 0.93
COL4A1P02462 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
COL4A1P02462 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
COL4A1P02462 AC005237.2-201ENST00000434368 219 ntBASIC20.89■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms