Protein–RNA interactions for Protein: Q9XRX5

HHLA3, HERV-H LTR-associating protein 3, humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HHLA3Q9XRX5 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC12.73□□□□□ -0.37
HHLA3Q9XRX5 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
HHLA3Q9XRX5 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
HHLA3Q9XRX5 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
HHLA3Q9XRX5 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
HHLA3Q9XRX5 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
HHLA3Q9XRX5 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC12.73□□□□□ -0.37
HHLA3Q9XRX5 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
HHLA3Q9XRX5 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC12.73□□□□□ -0.37
HHLA3Q9XRX5 MYB-242ENST00000618728 3545 ntTSL 5 BASIC12.73□□□□□ -0.37
HHLA3Q9XRX5 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC12.73□□□□□ -0.37
HHLA3Q9XRX5 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
HHLA3Q9XRX5 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
HHLA3Q9XRX5 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
HHLA3Q9XRX5 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
HHLA3Q9XRX5 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC12.73□□□□□ -0.37
HHLA3Q9XRX5 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC12.72□□□□□ -0.37
HHLA3Q9XRX5 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
HHLA3Q9XRX5 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC12.72□□□□□ -0.37
HHLA3Q9XRX5 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
HHLA3Q9XRX5 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC12.72□□□□□ -0.37
HHLA3Q9XRX5 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
HHLA3Q9XRX5 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
HHLA3Q9XRX5 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC12.72□□□□□ -0.37
HHLA3Q9XRX5 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
HHLA3Q9XRX5 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
HHLA3Q9XRX5 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
HHLA3Q9XRX5 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC12.72□□□□□ -0.37
HHLA3Q9XRX5 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
HHLA3Q9XRX5 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC12.72□□□□□ -0.37
HHLA3Q9XRX5 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC12.72□□□□□ -0.37
HHLA3Q9XRX5 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
HHLA3Q9XRX5 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
HHLA3Q9XRX5 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC12.72□□□□□ -0.37
HHLA3Q9XRX5 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
HHLA3Q9XRX5 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
HHLA3Q9XRX5 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
HHLA3Q9XRX5 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC12.72□□□□□ -0.37
HHLA3Q9XRX5 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
HHLA3Q9XRX5 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC12.72□□□□□ -0.37
HHLA3Q9XRX5 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC12.72□□□□□ -0.37
HHLA3Q9XRX5 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC12.72□□□□□ -0.37
HHLA3Q9XRX5 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC12.72□□□□□ -0.37
HHLA3Q9XRX5 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
HHLA3Q9XRX5 TEN1-204ENST00000588202 862 ntTSL 3 BASIC12.72□□□□□ -0.37
HHLA3Q9XRX5 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC12.72□□□□□ -0.37
HHLA3Q9XRX5 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
HHLA3Q9XRX5 AC133963.1-201ENST00000504166 1679 ntBASIC12.72□□□□□ -0.37
HHLA3Q9XRX5 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
HHLA3Q9XRX5 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
HHLA3Q9XRX5 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
HHLA3Q9XRX5 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
HHLA3Q9XRX5 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
HHLA3Q9XRX5 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
HHLA3Q9XRX5 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC12.72□□□□□ -0.37
HHLA3Q9XRX5 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
HHLA3Q9XRX5 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
HHLA3Q9XRX5 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC12.71□□□□□ -0.37
HHLA3Q9XRX5 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
HHLA3Q9XRX5 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC12.71□□□□□ -0.37
HHLA3Q9XRX5 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
HHLA3Q9XRX5 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
HHLA3Q9XRX5 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
HHLA3Q9XRX5 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
HHLA3Q9XRX5 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC12.71□□□□□ -0.37
HHLA3Q9XRX5 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
HHLA3Q9XRX5 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC12.71□□□□□ -0.37
HHLA3Q9XRX5 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC12.71□□□□□ -0.37
HHLA3Q9XRX5 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
HHLA3Q9XRX5 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
HHLA3Q9XRX5 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
HHLA3Q9XRX5 AC132938.6-201ENST00000623828 1655 ntBASIC12.71□□□□□ -0.37
HHLA3Q9XRX5 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC12.71□□□□□ -0.37
HHLA3Q9XRX5 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
HHLA3Q9XRX5 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC12.71□□□□□ -0.37
HHLA3Q9XRX5 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
HHLA3Q9XRX5 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC12.71□□□□□ -0.37
HHLA3Q9XRX5 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
HHLA3Q9XRX5 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.37
HHLA3Q9XRX5 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC12.71□□□□□ -0.37
HHLA3Q9XRX5 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC12.71□□□□□ -0.37
HHLA3Q9XRX5 SAPCD2P2-201ENST00000431719 1174 ntBASIC12.71□□□□□ -0.37
HHLA3Q9XRX5 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC12.71□□□□□ -0.37
HHLA3Q9XRX5 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC12.71□□□□□ -0.37
HHLA3Q9XRX5 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC12.71□□□□□ -0.37
HHLA3Q9XRX5 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC12.71□□□□□ -0.37
HHLA3Q9XRX5 TK1-205ENST00000590862 642 ntTSL 3 BASIC12.71□□□□□ -0.37
HHLA3Q9XRX5 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC12.71□□□□□ -0.37
HHLA3Q9XRX5 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.37
HHLA3Q9XRX5 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
HHLA3Q9XRX5 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC12.71□□□□□ -0.37
HHLA3Q9XRX5 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
HHLA3Q9XRX5 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC12.71□□□□□ -0.37
HHLA3Q9XRX5 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
HHLA3Q9XRX5 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
HHLA3Q9XRX5 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
HHLA3Q9XRX5 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC12.71□□□□□ -0.38
HHLA3Q9XRX5 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC12.71□□□□□ -0.38
HHLA3Q9XRX5 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.38
HHLA3Q9XRX5 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC12.71□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms