Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SIX4Q9UIU6 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SIX4Q9UIU6 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
SIX4Q9UIU6 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SIX4Q9UIU6 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SIX4Q9UIU6 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SIX4Q9UIU6 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
SIX4Q9UIU6 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC18.47■□□□□ 0.55
SIX4Q9UIU6 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SIX4Q9UIU6 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SIX4Q9UIU6 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
SIX4Q9UIU6 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
SIX4Q9UIU6 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC18.46■□□□□ 0.55
SIX4Q9UIU6 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC18.46■□□□□ 0.55
SIX4Q9UIU6 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC18.46■□□□□ 0.55
SIX4Q9UIU6 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC18.46■□□□□ 0.55
SIX4Q9UIU6 LBH-204ENST00000406087 559 ntTSL 4 BASIC18.46■□□□□ 0.55
SIX4Q9UIU6 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
SIX4Q9UIU6 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
SIX4Q9UIU6 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
SIX4Q9UIU6 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
SIX4Q9UIU6 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC18.46■□□□□ 0.55
SIX4Q9UIU6 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC18.46■□□□□ 0.55
SIX4Q9UIU6 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC18.46■□□□□ 0.55
SIX4Q9UIU6 OR7E47P-204ENST00000575924 449 ntBASIC18.46■□□□□ 0.55
SIX4Q9UIU6 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC18.46■□□□□ 0.55
SIX4Q9UIU6 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
SIX4Q9UIU6 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
SIX4Q9UIU6 LETM1P2-201ENST00000597330 2178 ntBASIC18.46■□□□□ 0.55
SIX4Q9UIU6 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
SIX4Q9UIU6 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC18.46■□□□□ 0.55
SIX4Q9UIU6 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
SIX4Q9UIU6 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
SIX4Q9UIU6 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC18.46■□□□□ 0.55
SIX4Q9UIU6 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SIX4Q9UIU6 PI4KAP1-204ENST00000612579 1703 ntBASIC18.46■□□□□ 0.55
SIX4Q9UIU6 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC18.46■□□□□ 0.55
SIX4Q9UIU6 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC18.46■□□□□ 0.55
SIX4Q9UIU6 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SIX4Q9UIU6 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
SIX4Q9UIU6 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SIX4Q9UIU6 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SIX4Q9UIU6 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SIX4Q9UIU6 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SIX4Q9UIU6 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SIX4Q9UIU6 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
SIX4Q9UIU6 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SIX4Q9UIU6 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC18.45■□□□□ 0.54
SIX4Q9UIU6 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC18.45■□□□□ 0.54
SIX4Q9UIU6 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
SIX4Q9UIU6 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
SIX4Q9UIU6 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
SIX4Q9UIU6 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
SIX4Q9UIU6 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SIX4Q9UIU6 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC18.45■□□□□ 0.54
SIX4Q9UIU6 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
SIX4Q9UIU6 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC18.45■□□□□ 0.54
SIX4Q9UIU6 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC18.45■□□□□ 0.54
SIX4Q9UIU6 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC18.45■□□□□ 0.54
SIX4Q9UIU6 PIN1-206ENST00000587625 878 ntTSL 2 BASIC18.45■□□□□ 0.54
SIX4Q9UIU6 AC004790.2-201ENST00000623588 572 ntBASIC18.45■□□□□ 0.54
SIX4Q9UIU6 LINC02012-201ENST00000608206 1725 ntBASIC18.45■□□□□ 0.54
SIX4Q9UIU6 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
SIX4Q9UIU6 CEP83-AS1-201ENST00000623122 2482 ntBASIC18.45■□□□□ 0.54
SIX4Q9UIU6 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
SIX4Q9UIU6 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SIX4Q9UIU6 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SIX4Q9UIU6 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SIX4Q9UIU6 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SIX4Q9UIU6 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC18.44■□□□□ 0.54
SIX4Q9UIU6 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC18.44■□□□□ 0.54
SIX4Q9UIU6 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
SIX4Q9UIU6 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC18.44■□□□□ 0.54
SIX4Q9UIU6 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC18.44■□□□□ 0.54
SIX4Q9UIU6 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
SIX4Q9UIU6 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
SIX4Q9UIU6 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC18.44■□□□□ 0.54
SIX4Q9UIU6 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC18.44■□□□□ 0.54
SIX4Q9UIU6 MIR574-201ENST00000385209 96 ntBASIC18.44■□□□□ 0.54
SIX4Q9UIU6 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
SIX4Q9UIU6 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
SIX4Q9UIU6 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC18.44■□□□□ 0.54
SIX4Q9UIU6 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC18.44■□□□□ 0.54
SIX4Q9UIU6 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
SIX4Q9UIU6 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC18.44■□□□□ 0.54
SIX4Q9UIU6 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SIX4Q9UIU6 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
SIX4Q9UIU6 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SIX4Q9UIU6 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
SIX4Q9UIU6 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SIX4Q9UIU6 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SIX4Q9UIU6 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SIX4Q9UIU6 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SIX4Q9UIU6 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC18.43■□□□□ 0.54
SIX4Q9UIU6 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SIX4Q9UIU6 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SIX4Q9UIU6 AC092053.1-201ENST00000605787 1936 ntBASIC18.43■□□□□ 0.54
SIX4Q9UIU6 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SIX4Q9UIU6 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SIX4Q9UIU6 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 63.1 ms