Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS29Q9UBQ0 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS29Q9UBQ0 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VPS29Q9UBQ0 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VPS29Q9UBQ0 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS29Q9UBQ0 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC16.62■□□□□ 0.25
VPS29Q9UBQ0 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS29Q9UBQ0 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VPS29Q9UBQ0 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
VPS29Q9UBQ0 RCN1P2-201ENST00000398357 915 ntBASIC16.62■□□□□ 0.25
VPS29Q9UBQ0 COPS8-203ENST00000409334 794 ntTSL 5 BASIC16.62■□□□□ 0.25
VPS29Q9UBQ0 KLF4P1-201ENST00000412782 1185 ntBASIC16.62■□□□□ 0.25
VPS29Q9UBQ0 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC16.62■□□□□ 0.25
VPS29Q9UBQ0 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VPS29Q9UBQ0 AC074051.2-201ENST00000565115 352 ntBASIC16.62■□□□□ 0.25
VPS29Q9UBQ0 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC16.62■□□□□ 0.25
VPS29Q9UBQ0 MIR3180-1-201ENST00000580374 94 ntBASIC16.62■□□□□ 0.25
VPS29Q9UBQ0 MIR3180-3-201ENST00000584616 94 ntBASIC16.62■□□□□ 0.25
VPS29Q9UBQ0 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC16.62■□□□□ 0.25
VPS29Q9UBQ0 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC16.62■□□□□ 0.25
VPS29Q9UBQ0 AC069148.1-201ENST00000608741 768 ntBASIC16.62■□□□□ 0.25
VPS29Q9UBQ0 AC091076.1-201ENST00000610741 619 ntBASIC16.62■□□□□ 0.25
VPS29Q9UBQ0 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC16.62■□□□□ 0.25
VPS29Q9UBQ0 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC16.62■□□□□ 0.25
VPS29Q9UBQ0 AC073592.5-201ENST00000624854 528 ntBASIC16.62■□□□□ 0.25
VPS29Q9UBQ0 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
VPS29Q9UBQ0 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS29Q9UBQ0 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS29Q9UBQ0 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS29Q9UBQ0 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC16.62■□□□□ 0.25
VPS29Q9UBQ0 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
VPS29Q9UBQ0 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS29Q9UBQ0 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS29Q9UBQ0 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS29Q9UBQ0 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
VPS29Q9UBQ0 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
VPS29Q9UBQ0 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
VPS29Q9UBQ0 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS29Q9UBQ0 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC16.61■□□□□ 0.25
VPS29Q9UBQ0 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC16.61■□□□□ 0.25
VPS29Q9UBQ0 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS29Q9UBQ0 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS29Q9UBQ0 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS29Q9UBQ0 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS29Q9UBQ0 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
VPS29Q9UBQ0 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
VPS29Q9UBQ0 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS29Q9UBQ0 AC092053.1-201ENST00000605787 1936 ntBASIC16.61■□□□□ 0.25
VPS29Q9UBQ0 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS29Q9UBQ0 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC16.61■□□□□ 0.25
VPS29Q9UBQ0 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
VPS29Q9UBQ0 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
VPS29Q9UBQ0 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC16.61■□□□□ 0.25
VPS29Q9UBQ0 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC16.61■□□□□ 0.25
VPS29Q9UBQ0 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
VPS29Q9UBQ0 POM121L3P-201ENST00000419331 1163 ntBASIC16.61■□□□□ 0.25
VPS29Q9UBQ0 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC16.61■□□□□ 0.25
VPS29Q9UBQ0 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
VPS29Q9UBQ0 KRT18P35-201ENST00000510488 1269 ntBASIC16.61■□□□□ 0.25
VPS29Q9UBQ0 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
VPS29Q9UBQ0 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC16.61■□□□□ 0.25
VPS29Q9UBQ0 NPAP1P7-201ENST00000613027 823 ntBASIC16.61■□□□□ 0.25
VPS29Q9UBQ0 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC16.61■□□□□ 0.25
VPS29Q9UBQ0 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
VPS29Q9UBQ0 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC16.61■□□□□ 0.25
VPS29Q9UBQ0 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
VPS29Q9UBQ0 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC16.61■□□□□ 0.25
VPS29Q9UBQ0 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS29Q9UBQ0 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
VPS29Q9UBQ0 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
VPS29Q9UBQ0 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS29Q9UBQ0 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
VPS29Q9UBQ0 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC16.61■□□□□ 0.25
VPS29Q9UBQ0 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS29Q9UBQ0 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS29Q9UBQ0 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS29Q9UBQ0 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC16.6■□□□□ 0.25
VPS29Q9UBQ0 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS29Q9UBQ0 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
VPS29Q9UBQ0 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS29Q9UBQ0 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS29Q9UBQ0 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS29Q9UBQ0 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS29Q9UBQ0 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS29Q9UBQ0 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC16.6■□□□□ 0.25
VPS29Q9UBQ0 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
VPS29Q9UBQ0 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
VPS29Q9UBQ0 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC16.6■□□□□ 0.25
VPS29Q9UBQ0 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS29Q9UBQ0 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS29Q9UBQ0 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
VPS29Q9UBQ0 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS29Q9UBQ0 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC16.6■□□□□ 0.25
VPS29Q9UBQ0 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS29Q9UBQ0 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC16.6■□□□□ 0.25
VPS29Q9UBQ0 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC16.6■□□□□ 0.25
VPS29Q9UBQ0 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC16.6■□□□□ 0.25
VPS29Q9UBQ0 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC16.6■□□□□ 0.25
VPS29Q9UBQ0 AC104819.1-201ENST00000504587 486 ntBASIC16.6■□□□□ 0.25
VPS29Q9UBQ0 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms