Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC28BQ9BUN5 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC16.89■□□□□ 0.29
CCDC28BQ9BUN5 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC28BQ9BUN5 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC16.88■□□□□ 0.29
CCDC28BQ9BUN5 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC28BQ9BUN5 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC28BQ9BUN5 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC16.88■□□□□ 0.29
CCDC28BQ9BUN5 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC28BQ9BUN5 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC16.88■□□□□ 0.29
CCDC28BQ9BUN5 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
CCDC28BQ9BUN5 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC28BQ9BUN5 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC28BQ9BUN5 MIR718-201ENST00000390190 70 ntBASIC16.88■□□□□ 0.29
CCDC28BQ9BUN5 COX5BP2-201ENST00000392354 334 ntBASIC16.88■□□□□ 0.29
CCDC28BQ9BUN5 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC16.88■□□□□ 0.29
CCDC28BQ9BUN5 MTCL1P1-201ENST00000446207 792 ntBASIC16.88■□□□□ 0.29
CCDC28BQ9BUN5 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC16.88■□□□□ 0.29
CCDC28BQ9BUN5 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC16.88■□□□□ 0.29
CCDC28BQ9BUN5 PPOX-214ENST00000535223 664 ntTSL 3 BASIC16.88■□□□□ 0.29
CCDC28BQ9BUN5 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC28BQ9BUN5 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC16.88■□□□□ 0.29
CCDC28BQ9BUN5 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC16.88■□□□□ 0.29
CCDC28BQ9BUN5 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
CCDC28BQ9BUN5 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC16.88■□□□□ 0.29
CCDC28BQ9BUN5 ANKRD20A8P-203ENST00000641373 517 ntBASIC16.88■□□□□ 0.29
CCDC28BQ9BUN5 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC28BQ9BUN5 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC28BQ9BUN5 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC28BQ9BUN5 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC16.88■□□□□ 0.29
CCDC28BQ9BUN5 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC16.88■□□□□ 0.29
CCDC28BQ9BUN5 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC16.88■□□□□ 0.29
CCDC28BQ9BUN5 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC28BQ9BUN5 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC16.88■□□□□ 0.29
CCDC28BQ9BUN5 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC16.88■□□□□ 0.29
CCDC28BQ9BUN5 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC28BQ9BUN5 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC28BQ9BUN5 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC28BQ9BUN5 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC16.88■□□□□ 0.29
CCDC28BQ9BUN5 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC16.88■□□□□ 0.29
CCDC28BQ9BUN5 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC28BQ9BUN5 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC28BQ9BUN5 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC28BQ9BUN5 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC16.87■□□□□ 0.29
CCDC28BQ9BUN5 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC28BQ9BUN5 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC28BQ9BUN5 AC006449.5-201ENST00000610658 2098 ntBASIC16.87■□□□□ 0.29
CCDC28BQ9BUN5 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC16.87■□□□□ 0.29
CCDC28BQ9BUN5 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC16.87■□□□□ 0.29
CCDC28BQ9BUN5 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC16.87■□□□□ 0.29
CCDC28BQ9BUN5 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC28BQ9BUN5 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC28BQ9BUN5 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC28BQ9BUN5 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC28BQ9BUN5 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC28BQ9BUN5 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC28BQ9BUN5 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC16.87■□□□□ 0.29
CCDC28BQ9BUN5 AL355075.4-201ENST00000554988 638 ntBASIC16.87■□□□□ 0.29
CCDC28BQ9BUN5 GCSHP2-201ENST00000560971 527 ntBASIC16.87■□□□□ 0.29
CCDC28BQ9BUN5 NAPSB-206ENST00000562112 1266 ntBASIC16.87■□□□□ 0.29
CCDC28BQ9BUN5 AC079602.3-201ENST00000623931 403 ntBASIC16.87■□□□□ 0.29
CCDC28BQ9BUN5 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC28BQ9BUN5 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC16.87■□□□□ 0.29
CCDC28BQ9BUN5 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC28BQ9BUN5 AC097374.2-201ENST00000618617 1306 ntBASIC16.87■□□□□ 0.29
CCDC28BQ9BUN5 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC16.87■□□□□ 0.29
CCDC28BQ9BUN5 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC28BQ9BUN5 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC16.87■□□□□ 0.29
CCDC28BQ9BUN5 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
CCDC28BQ9BUN5 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC16.87■□□□□ 0.29
CCDC28BQ9BUN5 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC28BQ9BUN5 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC28BQ9BUN5 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
CCDC28BQ9BUN5 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC28BQ9BUN5 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC28BQ9BUN5 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC28BQ9BUN5 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC16.86■□□□□ 0.29
CCDC28BQ9BUN5 AC008741.2-201ENST00000612792 3115 ntBASIC16.86■□□□□ 0.29
CCDC28BQ9BUN5 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC16.86■□□□□ 0.29
CCDC28BQ9BUN5 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC16.86■□□□□ 0.29
CCDC28BQ9BUN5 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
CCDC28BQ9BUN5 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC28BQ9BUN5 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC28BQ9BUN5 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC28BQ9BUN5 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC16.86■□□□□ 0.29
CCDC28BQ9BUN5 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC16.86■□□□□ 0.29
CCDC28BQ9BUN5 ECEL1P2-202ENST00000465689 757 ntBASIC16.86■□□□□ 0.29
CCDC28BQ9BUN5 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC16.86■□□□□ 0.29
CCDC28BQ9BUN5 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC16.86■□□□□ 0.29
CCDC28BQ9BUN5 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
CCDC28BQ9BUN5 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC28BQ9BUN5 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC28BQ9BUN5 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC28BQ9BUN5 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC28BQ9BUN5 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC16.86■□□□□ 0.29
CCDC28BQ9BUN5 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
CCDC28BQ9BUN5 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC28BQ9BUN5 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC16.86■□□□□ 0.29
CCDC28BQ9BUN5 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC28BQ9BUN5 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
CCDC28BQ9BUN5 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms