Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 AC011498.5-201ENST00000592027 486 ntBASIC17.98■□□□□ 0.47
ATG4AQ8WYN0 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC17.98■□□□□ 0.47
ATG4AQ8WYN0 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
ATG4AQ8WYN0 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC17.98■□□□□ 0.47
ATG4AQ8WYN0 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC17.98■□□□□ 0.47
ATG4AQ8WYN0 AC078925.2-201ENST00000624013 1973 ntBASIC17.98■□□□□ 0.47
ATG4AQ8WYN0 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
ATG4AQ8WYN0 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
ATG4AQ8WYN0 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
ATG4AQ8WYN0 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
ATG4AQ8WYN0 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
ATG4AQ8WYN0 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC17.98■□□□□ 0.47
ATG4AQ8WYN0 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
ATG4AQ8WYN0 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC17.98■□□□□ 0.47
ATG4AQ8WYN0 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC17.98■□□□□ 0.47
ATG4AQ8WYN0 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC17.98■□□□□ 0.47
ATG4AQ8WYN0 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
ATG4AQ8WYN0 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
ATG4AQ8WYN0 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
ATG4AQ8WYN0 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC17.97■□□□□ 0.47
ATG4AQ8WYN0 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
ATG4AQ8WYN0 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
ATG4AQ8WYN0 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC17.97■□□□□ 0.47
ATG4AQ8WYN0 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
ATG4AQ8WYN0 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
ATG4AQ8WYN0 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC17.97■□□□□ 0.47
ATG4AQ8WYN0 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
ATG4AQ8WYN0 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
ATG4AQ8WYN0 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
ATG4AQ8WYN0 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC17.97■□□□□ 0.47
ATG4AQ8WYN0 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC17.97■□□□□ 0.47
ATG4AQ8WYN0 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
ATG4AQ8WYN0 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
ATG4AQ8WYN0 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
ATG4AQ8WYN0 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
ATG4AQ8WYN0 GUK1-204ENST00000366721 689 ntTSL 3 BASIC17.97■□□□□ 0.47
ATG4AQ8WYN0 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
ATG4AQ8WYN0 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
ATG4AQ8WYN0 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC17.97■□□□□ 0.47
ATG4AQ8WYN0 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC17.97■□□□□ 0.47
ATG4AQ8WYN0 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
ATG4AQ8WYN0 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
ATG4AQ8WYN0 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
ATG4AQ8WYN0 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
ATG4AQ8WYN0 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC17.97■□□□□ 0.47
ATG4AQ8WYN0 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
ATG4AQ8WYN0 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC17.97■□□□□ 0.47
ATG4AQ8WYN0 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC17.97■□□□□ 0.47
ATG4AQ8WYN0 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
ATG4AQ8WYN0 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
ATG4AQ8WYN0 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
ATG4AQ8WYN0 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
ATG4AQ8WYN0 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
ATG4AQ8WYN0 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC17.96■□□□□ 0.47
ATG4AQ8WYN0 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC17.96■□□□□ 0.47
ATG4AQ8WYN0 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
ATG4AQ8WYN0 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC17.96■□□□□ 0.47
ATG4AQ8WYN0 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
ATG4AQ8WYN0 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC17.96■□□□□ 0.47
ATG4AQ8WYN0 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
ATG4AQ8WYN0 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC17.96■□□□□ 0.47
ATG4AQ8WYN0 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC17.96■□□□□ 0.47
ATG4AQ8WYN0 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
ATG4AQ8WYN0 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC17.96■□□□□ 0.47
ATG4AQ8WYN0 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
ATG4AQ8WYN0 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
ATG4AQ8WYN0 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC17.96■□□□□ 0.47
ATG4AQ8WYN0 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC17.96■□□□□ 0.47
ATG4AQ8WYN0 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC17.96■□□□□ 0.47
ATG4AQ8WYN0 MEG3-211ENST00000452514 461 ntTSL 3 BASIC17.96■□□□□ 0.47
ATG4AQ8WYN0 AC122714.2-201ENST00000502787 707 ntBASIC17.96■□□□□ 0.47
ATG4AQ8WYN0 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC17.96■□□□□ 0.47
ATG4AQ8WYN0 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC17.96■□□□□ 0.47
ATG4AQ8WYN0 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC17.96■□□□□ 0.47
ATG4AQ8WYN0 IGHV3-41-201ENST00000613121 348 ntBASIC17.96■□□□□ 0.47
ATG4AQ8WYN0 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
ATG4AQ8WYN0 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC17.96■□□□□ 0.47
ATG4AQ8WYN0 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
ATG4AQ8WYN0 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
ATG4AQ8WYN0 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
ATG4AQ8WYN0 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
ATG4AQ8WYN0 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
ATG4AQ8WYN0 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
ATG4AQ8WYN0 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC17.96■□□□□ 0.46
ATG4AQ8WYN0 PCDH8P1-201ENST00000428983 2773 ntBASIC17.96■□□□□ 0.46
ATG4AQ8WYN0 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
ATG4AQ8WYN0 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
ATG4AQ8WYN0 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC17.95■□□□□ 0.46
ATG4AQ8WYN0 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC17.95■□□□□ 0.46
ATG4AQ8WYN0 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
ATG4AQ8WYN0 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC17.95■□□□□ 0.46
ATG4AQ8WYN0 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
ATG4AQ8WYN0 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
ATG4AQ8WYN0 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC17.95■□□□□ 0.46
ATG4AQ8WYN0 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
ATG4AQ8WYN0 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC17.95■□□□□ 0.46
ATG4AQ8WYN0 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
ATG4AQ8WYN0 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC17.95■□□□□ 0.46
ATG4AQ8WYN0 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC17.95■□□□□ 0.46
ATG4AQ8WYN0 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms