Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
LMX1AQ8TE12 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC16.83■□□□□ 0.28
LMX1AQ8TE12 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC16.83■□□□□ 0.28
LMX1AQ8TE12 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
LMX1AQ8TE12 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
LMX1AQ8TE12 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
LMX1AQ8TE12 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC16.83■□□□□ 0.28
LMX1AQ8TE12 CCND1-203ENST00000536559 553 ntTSL 3 BASIC16.83■□□□□ 0.28
LMX1AQ8TE12 AL031432.2-201ENST00000566714 459 ntBASIC16.83■□□□□ 0.28
LMX1AQ8TE12 AL928711.1-201ENST00000570165 459 ntBASIC16.83■□□□□ 0.28
LMX1AQ8TE12 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC16.83■□□□□ 0.28
LMX1AQ8TE12 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
LMX1AQ8TE12 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
LMX1AQ8TE12 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
LMX1AQ8TE12 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC16.83■□□□□ 0.28
LMX1AQ8TE12 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC16.83■□□□□ 0.28
LMX1AQ8TE12 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
LMX1AQ8TE12 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
LMX1AQ8TE12 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LMX1AQ8TE12 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
LMX1AQ8TE12 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LMX1AQ8TE12 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC16.82■□□□□ 0.28
LMX1AQ8TE12 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LMX1AQ8TE12 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
LMX1AQ8TE12 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
LMX1AQ8TE12 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LMX1AQ8TE12 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LMX1AQ8TE12 REM2-202ENST00000536884 1331 ntTSL 2 BASIC16.82■□□□□ 0.28
LMX1AQ8TE12 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC16.82■□□□□ 0.28
LMX1AQ8TE12 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC16.82■□□□□ 0.28
LMX1AQ8TE12 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC16.82■□□□□ 0.28
LMX1AQ8TE12 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC16.82■□□□□ 0.28
LMX1AQ8TE12 AL513480.1-201ENST00000451731 511 ntBASIC16.82■□□□□ 0.28
LMX1AQ8TE12 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC16.82■□□□□ 0.28
LMX1AQ8TE12 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC16.82■□□□□ 0.28
LMX1AQ8TE12 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC16.82■□□□□ 0.28
LMX1AQ8TE12 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC16.82■□□□□ 0.28
LMX1AQ8TE12 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC16.82■□□□□ 0.28
LMX1AQ8TE12 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC16.82■□□□□ 0.28
LMX1AQ8TE12 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC16.82■□□□□ 0.28
LMX1AQ8TE12 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC16.82■□□□□ 0.28
LMX1AQ8TE12 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC16.82■□□□□ 0.28
LMX1AQ8TE12 AL355385.1-201ENST00000606123 409 ntBASIC16.82■□□□□ 0.28
LMX1AQ8TE12 COMP-202ENST00000425807 2292 ntTSL 2 BASIC16.82■□□□□ 0.28
LMX1AQ8TE12 AC012317.2-201ENST00000623305 2251 ntBASIC16.82■□□□□ 0.28
LMX1AQ8TE12 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC16.82■□□□□ 0.28
LMX1AQ8TE12 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
LMX1AQ8TE12 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
LMX1AQ8TE12 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
LMX1AQ8TE12 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
LMX1AQ8TE12 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
LMX1AQ8TE12 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
LMX1AQ8TE12 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC16.81■□□□□ 0.28
LMX1AQ8TE12 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
LMX1AQ8TE12 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
LMX1AQ8TE12 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC16.81■□□□□ 0.28
LMX1AQ8TE12 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
LMX1AQ8TE12 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC16.81■□□□□ 0.28
LMX1AQ8TE12 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LMX1AQ8TE12 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC16.81■□□□□ 0.28
LMX1AQ8TE12 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC16.81■□□□□ 0.28
LMX1AQ8TE12 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LMX1AQ8TE12 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LMX1AQ8TE12 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LMX1AQ8TE12 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LMX1AQ8TE12 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LMX1AQ8TE12 FAM185BP-201ENST00000443595 716 ntBASIC16.81■□□□□ 0.28
LMX1AQ8TE12 PUS1-205ENST00000535067 838 ntTSL 3 BASIC16.81■□□□□ 0.28
LMX1AQ8TE12 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC16.81■□□□□ 0.28
LMX1AQ8TE12 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC16.81■□□□□ 0.28
LMX1AQ8TE12 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC16.81■□□□□ 0.28
LMX1AQ8TE12 AC091812.2-201ENST00000619081 385 ntBASIC16.81■□□□□ 0.28
LMX1AQ8TE12 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
LMX1AQ8TE12 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LMX1AQ8TE12 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LMX1AQ8TE12 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
LMX1AQ8TE12 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC16.81■□□□□ 0.28
LMX1AQ8TE12 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
LMX1AQ8TE12 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LMX1AQ8TE12 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
LMX1AQ8TE12 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC16.81■□□□□ 0.28
LMX1AQ8TE12 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
LMX1AQ8TE12 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
LMX1AQ8TE12 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
LMX1AQ8TE12 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC16.8■□□□□ 0.28
LMX1AQ8TE12 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
LMX1AQ8TE12 LINC00304-203ENST00000565008 1864 ntBASIC16.8■□□□□ 0.28
LMX1AQ8TE12 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
LMX1AQ8TE12 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
LMX1AQ8TE12 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
LMX1AQ8TE12 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC16.8■□□□□ 0.28
LMX1AQ8TE12 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
LMX1AQ8TE12 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LMX1AQ8TE12 NME9-203ENST00000383180 2133 ntTSL 2 BASIC16.8■□□□□ 0.28
LMX1AQ8TE12 HMGN1P19-201ENST00000436976 333 ntBASIC16.8■□□□□ 0.28
LMX1AQ8TE12 PAWRP1-201ENST00000451083 565 ntBASIC16.8■□□□□ 0.28
LMX1AQ8TE12 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC16.8■□□□□ 0.28
LMX1AQ8TE12 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC16.8■□□□□ 0.28
LMX1AQ8TE12 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
LMX1AQ8TE12 MED16-214ENST00000617672 554 ntTSL 5 BASIC16.8■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 43.1 ms