Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 CORO1C-210ENST00000549384 891 ntTSL 522.06■■□□□ 1.129e-14■□□□□ 8.6
DDX55Q8NHQ9 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.759e-14■□□□□ 8.6
DDX55Q8NHQ9 CORO1C-203ENST00000421578 1296 ntTSL 2 BASIC16.1■□□□□ 0.179e-14■□□□□ 8.6
DDX55Q8NHQ9 CORO1C-206ENST00000546705 577 ntTSL 316.1■□□□□ 0.179e-14■□□□□ 8.6
DDX55Q8NHQ9 CORO1C-201ENST00000261401 3892 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.429e-14■□□□□ 8.6
DDX55Q8NHQ9 CORO1C-212ENST00000549772 1710 ntTSL 1 (best) BASIC12.35□□□□□ -0.439e-14■□□□□ 8.6
DDX55Q8NHQ9 CORO1C-202ENST00000420959 3921 ntTSL 1 (best) BASIC8.67□□□□□ -1.029e-14■□□□□ 8.6
DDX55Q8NHQ9 BCAM-205ENST00000589558 611 ntTSL 224.88■■□□□ 1.572e-14■□□□□ 8.5
DDX55Q8NHQ9 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.932e-14■□□□□ 8.5
DDX55Q8NHQ9 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC18.15■□□□□ 0.52e-14■□□□□ 8.5
DDX55Q8NHQ9 BCAM-211ENST00000611077 3430 ntTSL 5 BASIC14.17□□□□□ -0.142e-14■□□□□ 8.5
DDX55Q8NHQ9 GAS5-208ENST00000425771 242 ntTSL 3 BASIC5.57□□□□□ -1.528e-41■□□□□ 8.5
DDX55Q8NHQ9 EFNA1-204ENST00000474413 1083 ntTSL 322.02■■□□□ 1.121e-25■□□□□ 8.5
DDX55Q8NHQ9 EFNA1-205ENST00000497282 719 ntTSL 29.7□□□□□ -0.861e-25■□□□□ 8.5
DDX55Q8NHQ9 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC24.68■■□□□ 1.548e-22■□□□□ 8.5
DDX55Q8NHQ9 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC22.95■■□□□ 1.268e-22■□□□□ 8.5
DDX55Q8NHQ9 AK2-212ENST00000550338 886 ntTSL 216.59■□□□□ 0.258e-22■□□□□ 8.5
DDX55Q8NHQ9 AK2-206ENST00000480134 811 ntTSL 2 BASIC13.88□□□□□ -0.198e-22■□□□□ 8.5
DDX55Q8NHQ9 IL32-208ENST00000525003 544 ntTSL 219.03■□□□□ 0.643e-30■□□□□ 8.5
DDX55Q8NHQ9 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC18.28■□□□□ 0.523e-30■□□□□ 8.5
DDX55Q8NHQ9 GFER-205ENST00000569451 517 ntTSL 5 BASIC30.15■■■□□ 2.425e-9■□□□□ 8.5
DDX55Q8NHQ9 GFER-202ENST00000561710 482 ntTSL 227.36■■□□□ 1.975e-9■□□□□ 8.5
DDX55Q8NHQ9 GRINA-205ENST00000529301 1075 ntTSL 324.62■■□□□ 1.535e-9■□□□□ 8.5
DDX55Q8NHQ9 UBXN1-212ENST00000531625 542 ntTSL 224■■□□□ 1.435e-9■□□□□ 8.5
DDX55Q8NHQ9 UBXN1-211ENST00000531056 560 ntTSL 423.26■■□□□ 1.315e-9■□□□□ 8.5
DDX55Q8NHQ9 UBXN1-203ENST00000436354 592 ntTSL 223.17■■□□□ 1.35e-9■□□□□ 8.5
DDX55Q8NHQ9 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC23.01■■□□□ 1.275e-9■□□□□ 8.5
DDX55Q8NHQ9 GRINA-207ENST00000531992 597 ntTSL 221.85■■□□□ 1.095e-9■□□□□ 8.5
DDX55Q8NHQ9 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.885e-9■□□□□ 8.5
DDX55Q8NHQ9 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.744e-17■□□□□ 8.5
DDX55Q8NHQ9 GRINA-206ENST00000530898 558 ntTSL 219.43■□□□□ 0.75e-9■□□□□ 8.5
DDX55Q8NHQ9 RPL28-203ENST00000428193 573 ntTSL 2 BASIC18.74■□□□□ 0.595e-9■□□□□ 8.5
DDX55Q8NHQ9 GFER-203ENST00000565658 1365 ntTSL 1 (best)18.48■□□□□ 0.555e-9■□□□□ 8.5
DDX55Q8NHQ9 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC17.9■□□□□ 0.464e-17■□□□□ 8.5
DDX55Q8NHQ9 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC17.47■□□□□ 0.395e-9■□□□□ 8.5
DDX55Q8NHQ9 PDXK-210ENST00000468090 7297 ntTSL 1 (best) BASIC15.03■□□□□ -05e-9■□□□□ 8.5
DDX55Q8NHQ9 PRKAG1-201ENST00000316299 1683 ntTSL 2 BASIC15.03■□□□□ -04e-17■□□□□ 8.5
DDX55Q8NHQ9 PRKAG1-202ENST00000546531 1679 ntTSL 514.49□□□□□ -0.094e-17■□□□□ 8.5
DDX55Q8NHQ9 PDXK-201ENST00000291565 7366 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.245e-9■□□□□ 8.5
DDX55Q8NHQ9 PRKAG1-205ENST00000547306 1531 ntTSL 5 BASIC13.04□□□□□ -0.324e-17■□□□□ 8.5
DDX55Q8NHQ9 PDXK-209ENST00000467908 7194 ntTSL 3 BASIC12.48□□□□□ -0.415e-9■□□□□ 8.5
DDX55Q8NHQ9 PRKAG1-216ENST00000551770 1015 ntTSL 311.77□□□□□ -0.534e-17■□□□□ 8.5
DDX55Q8NHQ9 PRKAG1-207ENST00000548362 822 ntTSL 311.36□□□□□ -0.594e-17■□□□□ 8.5
DDX55Q8NHQ9 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.578e-32■□□□□ 8.5
DDX55Q8NHQ9 RPS14-204ENST00000518139 669 ntTSL 314.29□□□□□ -0.128e-32■□□□□ 8.5
DDX55Q8NHQ9 RPS14-207ENST00000521466 592 ntAPPRIS P1 TSL 513.57□□□□□ -0.248e-32■□□□□ 8.5
DDX55Q8NHQ9 FN1-213ENST00000456923 3720 ntTSL 27.46□□□□□ -1.221e-323■□□□□ 8.5
DDX55Q8NHQ9 LYZ-201ENST00000261267 1530 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.761e-323■□□□□ 8.5
DDX55Q8NHQ9 LYZ-203ENST00000549690 669 ntTSL 2 BASIC5.62□□□□□ -1.511e-323■□□□□ 8.5
DDX55Q8NHQ9 TTC3-223ENST00000492275 769 ntTSL 331.21■■■□□ 2.591e-9■□□□□ 8.5
DDX55Q8NHQ9 TTC3-212ENST00000463216 842 ntTSL 529.97■■■□□ 2.391e-9■□□□□ 8.5
DDX55Q8NHQ9 TTC3-224ENST00000494243 861 ntTSL 529.85■■■□□ 2.371e-9■□□□□ 8.5
DDX55Q8NHQ9 CPSF1-202ENST00000527827 619 ntTSL 229.67■■■□□ 2.342e-11■□□□□ 8.5
DDX55Q8NHQ9 TTC3-217ENST00000481605 1540 ntTSL 529.1■■■□□ 2.251e-9■□□□□ 8.5
DDX55Q8NHQ9 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.125e-7■□□□□ 8.5
DDX55Q8NHQ9 YWHAE-213ENST00000576854 1374 nt28.19■■■□□ 2.12e-6■□□□□ 8.5
DDX55Q8NHQ9 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC28.07■■■□□ 2.082e-6■□□□□ 8.5
DDX55Q8NHQ9 EEF1D-241ENST00000531931 614 ntTSL 328.06■■■□□ 2.082e-6■□□□□ 8.5
DDX55Q8NHQ9 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC27.92■■■□□ 2.061e-9■□□□□ 8.5
DDX55Q8NHQ9 EEF1D-212ENST00000525695 907 ntTSL 527.47■■□□□ 1.992e-6■□□□□ 8.5
DDX55Q8NHQ9 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC26.58■■□□□ 1.852e-6■□□□□ 8.5
DDX55Q8NHQ9 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.75e-7■□□□□ 8.5
DDX55Q8NHQ9 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC25.45■■□□□ 1.662e-6■□□□□ 8.5
DDX55Q8NHQ9 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC25.44■■□□□ 1.662e-6■□□□□ 8.5
DDX55Q8NHQ9 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC25.09■■□□□ 1.611e-10■□□□□ 8.5
DDX55Q8NHQ9 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC24.87■■□□□ 1.572e-6■□□□□ 8.5
DDX55Q8NHQ9 SND1-214ENST00000489417 1447 ntTSL 224.15■■□□□ 1.463e-22■□□□□ 8.5
DDX55Q8NHQ9 MTG1-204ENST00000473735 2212 ntTSL 523.96■■□□□ 1.431e-9■□□□□ 8.5
DDX55Q8NHQ9 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC23.77■■□□□ 1.42e-6■□□□□ 8.5
DDX55Q8NHQ9 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.391e-9■□□□□ 8.5
DDX55Q8NHQ9 TTC3-210ENST00000450533 2451 ntTSL 1 (best)23.34■■□□□ 1.331e-9■□□□□ 8.5
DDX55Q8NHQ9 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC22.5■■□□□ 1.191e-9■□□□□ 8.5
DDX55Q8NHQ9 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC22.38■■□□□ 1.172e-6■□□□□ 8.5
DDX55Q8NHQ9 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC22.36■■□□□ 1.171e-9■□□□□ 8.5
DDX55Q8NHQ9 JAGN1-202ENST00000489724 342 ntTSL 322.31■■□□□ 1.165e-7■□□□□ 8.5
DDX55Q8NHQ9 GLMP-208ENST00000481050 684 ntTSL 322.19■■□□□ 1.142e-12■□□□□ 8.5
DDX55Q8NHQ9 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC22.03■■□□□ 1.121e-10■□□□□ 8.5
DDX55Q8NHQ9 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC22■■□□□ 1.111e-9■□□□□ 8.5
DDX55Q8NHQ9 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC21.77■■□□□ 1.082e-6■□□□□ 8.5
DDX55Q8NHQ9 SLC19A1-208ENST00000468508 1435 ntTSL 221.76■■□□□ 1.072e-6■□□□□ 8.5
DDX55Q8NHQ9 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC21.75■■□□□ 1.071e-9■□□□□ 8.5
DDX55Q8NHQ9 EEF1D-249ENST00000533749 633 ntTSL 521.45■■□□□ 1.022e-6■□□□□ 8.5
DDX55Q8NHQ9 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.021e-10■□□□□ 8.5
DDX55Q8NHQ9 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC21.35■■□□□ 1.015e-7■□□□□ 8.5
DDX55Q8NHQ9 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC20.5■□□□□ 0.875e-7■□□□□ 8.5
DDX55Q8NHQ9 PLEKHB1-205ENST00000426191 2022 ntTSL 220.44■□□□□ 0.862e-6■□□□□ 8.5
DDX55Q8NHQ9 EEF1D-244ENST00000532543 791 ntTSL 320.42■□□□□ 0.862e-6■□□□□ 8.5
DDX55Q8NHQ9 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.851e-9■□□□□ 8.5
DDX55Q8NHQ9 ISOC2-204ENST00000587226 854 ntTSL 520.02■□□□□ 0.81e-10■□□□□ 8.5
DDX55Q8NHQ9 ISOC2-208ENST00000591718 786 ntTSL 219.96■□□□□ 0.791e-10■□□□□ 8.5
DDX55Q8NHQ9 MTG1-202ENST00000432508 953 ntTSL 219.78■□□□□ 0.761e-9■□□□□ 8.5
DDX55Q8NHQ9 GLMP-203ENST00000461597 658 ntTSL 319.61■□□□□ 0.732e-12■□□□□ 8.5
DDX55Q8NHQ9 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.732e-6■□□□□ 8.5
DDX55Q8NHQ9 NR2F2-AS1-202ENST00000557863 515 ntTSL 319.32■□□□□ 0.682e-17■□□□□ 8.5
DDX55Q8NHQ9 RPL13A-209ENST00000479992 850 ntTSL 319.31■□□□□ 0.682e-19■□□□□ 8.5
DDX55Q8NHQ9 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC19.07■□□□□ 0.642e-6■□□□□ 8.5
DDX55Q8NHQ9 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.622e-12■□□□□ 8.5
DDX55Q8NHQ9 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.622e-12■□□□□ 8.5
DDX55Q8NHQ9 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.612e-12■□□□□ 8.5
DDX55Q8NHQ9 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC18.75■□□□□ 0.592e-6■□□□□ 8.5
Retrieved 100 of 15,504 protein–RNA pairs in 428.5 ms