Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
CHD9Q3L8U1 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CHD9Q3L8U1 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC18.11■□□□□ 0.49
CHD9Q3L8U1 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CHD9Q3L8U1 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CHD9Q3L8U1 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC18.11■□□□□ 0.49
CHD9Q3L8U1 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC18.11■□□□□ 0.49
CHD9Q3L8U1 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
CHD9Q3L8U1 FOXO1B-201ENST00000504678 1527 ntBASIC18.11■□□□□ 0.49
CHD9Q3L8U1 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CHD9Q3L8U1 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CHD9Q3L8U1 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CHD9Q3L8U1 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC18.11■□□□□ 0.49
CHD9Q3L8U1 AC007967.4-201ENST00000614700 386 ntBASIC18.11■□□□□ 0.49
CHD9Q3L8U1 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
CHD9Q3L8U1 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CHD9Q3L8U1 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
CHD9Q3L8U1 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CHD9Q3L8U1 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
CHD9Q3L8U1 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
CHD9Q3L8U1 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CHD9Q3L8U1 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC18.1■□□□□ 0.49
CHD9Q3L8U1 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC18.1■□□□□ 0.49
CHD9Q3L8U1 ARL16-202ENST00000570561 768 ntTSL 2 BASIC18.1■□□□□ 0.49
CHD9Q3L8U1 AC004790.1-201ENST00000612686 536 ntBASIC18.1■□□□□ 0.49
CHD9Q3L8U1 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CHD9Q3L8U1 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
CHD9Q3L8U1 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CHD9Q3L8U1 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CHD9Q3L8U1 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
CHD9Q3L8U1 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
CHD9Q3L8U1 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC18.1■□□□□ 0.49
CHD9Q3L8U1 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC18.1■□□□□ 0.49
CHD9Q3L8U1 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC18.1■□□□□ 0.49
CHD9Q3L8U1 KRT17P8-201ENST00000540749 863 ntBASIC18.1■□□□□ 0.49
CHD9Q3L8U1 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
CHD9Q3L8U1 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC18.1■□□□□ 0.49
CHD9Q3L8U1 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
CHD9Q3L8U1 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC18.1■□□□□ 0.49
CHD9Q3L8U1 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
CHD9Q3L8U1 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
CHD9Q3L8U1 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
CHD9Q3L8U1 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CHD9Q3L8U1 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC18.1■□□□□ 0.49
CHD9Q3L8U1 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CHD9Q3L8U1 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CHD9Q3L8U1 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
CHD9Q3L8U1 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC18.09■□□□□ 0.49
CHD9Q3L8U1 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
CHD9Q3L8U1 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC18.09■□□□□ 0.49
CHD9Q3L8U1 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC18.09■□□□□ 0.49
CHD9Q3L8U1 SNX29P1-201ENST00000548357 1007 ntBASIC18.09■□□□□ 0.49
CHD9Q3L8U1 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC18.09■□□□□ 0.49
CHD9Q3L8U1 AC027307.2-201ENST00000591252 911 ntBASIC18.09■□□□□ 0.49
CHD9Q3L8U1 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CHD9Q3L8U1 AC004840.1-201ENST00000636359 365 ntBASIC18.09■□□□□ 0.49
CHD9Q3L8U1 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CHD9Q3L8U1 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CHD9Q3L8U1 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CHD9Q3L8U1 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CHD9Q3L8U1 AC007541.1-201ENST00000570282 1469 ntBASIC18.09■□□□□ 0.49
CHD9Q3L8U1 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC18.09■□□□□ 0.49
CHD9Q3L8U1 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CHD9Q3L8U1 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CHD9Q3L8U1 AL353779.1-201ENST00000434793 351 ntBASIC18.09■□□□□ 0.49
CHD9Q3L8U1 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CHD9Q3L8U1 NAA38-206ENST00000576384 424 ntTSL 2 BASIC18.09■□□□□ 0.49
CHD9Q3L8U1 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CHD9Q3L8U1 AC073592.8-201ENST00000624126 511 ntBASIC18.09■□□□□ 0.49
CHD9Q3L8U1 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CHD9Q3L8U1 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC18.09■□□□□ 0.49
CHD9Q3L8U1 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CHD9Q3L8U1 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CHD9Q3L8U1 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
CHD9Q3L8U1 AC016027.1-202ENST00000607927 1699 ntBASIC18.09■□□□□ 0.49
CHD9Q3L8U1 AC012569.1-201ENST00000591191 1524 ntBASIC18.09■□□□□ 0.49
CHD9Q3L8U1 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
CHD9Q3L8U1 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CHD9Q3L8U1 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
CHD9Q3L8U1 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC18.09■□□□□ 0.49
CHD9Q3L8U1 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC18.09■□□□□ 0.49
CHD9Q3L8U1 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC18.09■□□□□ 0.49
CHD9Q3L8U1 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CHD9Q3L8U1 AC112492.5-201ENST00000421897 457 ntBASIC18.09■□□□□ 0.49
CHD9Q3L8U1 MPI-209ENST00000564003 1195 ntTSL 2 BASIC18.09■□□□□ 0.49
CHD9Q3L8U1 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC18.09■□□□□ 0.49
CHD9Q3L8U1 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC18.08■□□□□ 0.49
CHD9Q3L8U1 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CHD9Q3L8U1 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CHD9Q3L8U1 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.49
CHD9Q3L8U1 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CHD9Q3L8U1 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CHD9Q3L8U1 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
CHD9Q3L8U1 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC18.08■□□□□ 0.48
CHD9Q3L8U1 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
CHD9Q3L8U1 MXI1-205ENST00000393134 889 ntTSL 2 BASIC18.08■□□□□ 0.48
CHD9Q3L8U1 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC18.08■□□□□ 0.48
CHD9Q3L8U1 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC18.08■□□□□ 0.48
CHD9Q3L8U1 AC005412.3-201ENST00000580309 715 ntBASIC18.08■□□□□ 0.48
CHD9Q3L8U1 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC18.08■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms