Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC15.26■□□□□ 0.03
CX3CR1P49238 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
CX3CR1P49238 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CX3CR1P49238 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
CX3CR1P49238 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CX3CR1P49238 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
CX3CR1P49238 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC15.26■□□□□ 0.03
CX3CR1P49238 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CX3CR1P49238 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CX3CR1P49238 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CX3CR1P49238 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CX3CR1P49238 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CX3CR1P49238 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
CX3CR1P49238 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CX3CR1P49238 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CX3CR1P49238 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CX3CR1P49238 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CX3CR1P49238 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
CX3CR1P49238 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC15.25■□□□□ 0.03
CX3CR1P49238 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CX3CR1P49238 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
CX3CR1P49238 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CX3CR1P49238 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CX3CR1P49238 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CX3CR1P49238 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC15.25■□□□□ 0.03
CX3CR1P49238 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CX3CR1P49238 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CX3CR1P49238 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
CX3CR1P49238 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CX3CR1P49238 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
CX3CR1P49238 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
CX3CR1P49238 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CX3CR1P49238 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CX3CR1P49238 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CX3CR1P49238 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
CX3CR1P49238 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CX3CR1P49238 FAM220CP-201ENST00000395253 831 ntBASIC15.25■□□□□ 0.03
CX3CR1P49238 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC15.25■□□□□ 0.03
CX3CR1P49238 CHCHD2P8-201ENST00000429873 447 ntBASIC15.25■□□□□ 0.03
CX3CR1P49238 AC246785.2-201ENST00000432512 513 ntBASIC15.25■□□□□ 0.03
CX3CR1P49238 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CX3CR1P49238 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
CX3CR1P49238 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CX3CR1P49238 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC15.25■□□□□ 0.03
CX3CR1P49238 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
CX3CR1P49238 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CX3CR1P49238 NME3-204ENST00000563498 920 ntTSL 2 BASIC15.25■□□□□ 0.03
CX3CR1P49238 AC111152.3-201ENST00000569699 673 ntBASIC15.25■□□□□ 0.03
CX3CR1P49238 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC15.25■□□□□ 0.03
CX3CR1P49238 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
CX3CR1P49238 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC15.25■□□□□ 0.03
CX3CR1P49238 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CX3CR1P49238 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CX3CR1P49238 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CX3CR1P49238 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CX3CR1P49238 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC15.25■□□□□ 0.03
CX3CR1P49238 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CX3CR1P49238 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CX3CR1P49238 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
CX3CR1P49238 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CX3CR1P49238 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CX3CR1P49238 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC15.25■□□□□ 0.03
CX3CR1P49238 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC15.25■□□□□ 0.03
CX3CR1P49238 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
CX3CR1P49238 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
CX3CR1P49238 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CX3CR1P49238 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
CX3CR1P49238 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC15.25■□□□□ 0.03
CX3CR1P49238 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CX3CR1P49238 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CX3CR1P49238 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CX3CR1P49238 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CX3CR1P49238 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
CX3CR1P49238 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC15.24■□□□□ 0.03
CX3CR1P49238 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC15.24■□□□□ 0.03
CX3CR1P49238 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
CX3CR1P49238 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CX3CR1P49238 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC15.24■□□□□ 0.03
CX3CR1P49238 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC15.24■□□□□ 0.03
CX3CR1P49238 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CX3CR1P49238 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CX3CR1P49238 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
CX3CR1P49238 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC15.24■□□□□ 0.03
CX3CR1P49238 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
CX3CR1P49238 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CX3CR1P49238 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CX3CR1P49238 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CX3CR1P49238 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC15.24■□□□□ 0.03
CX3CR1P49238 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CX3CR1P49238 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC15.24■□□□□ 0.03
CX3CR1P49238 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CX3CR1P49238 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC15.24■□□□□ 0.03
CX3CR1P49238 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CX3CR1P49238 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC15.24■□□□□ 0.03
CX3CR1P49238 MEG3-211ENST00000452514 461 ntTSL 3 BASIC15.24■□□□□ 0.03
CX3CR1P49238 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC15.24■□□□□ 0.03
CX3CR1P49238 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC15.24■□□□□ 0.03
CX3CR1P49238 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC15.24■□□□□ 0.03
CX3CR1P49238 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
CX3CR1P49238 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC15.24■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms