Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
PTPN9P43378 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PTPN9P43378 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
PTPN9P43378 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
PTPN9P43378 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC17.98■□□□□ 0.47
PTPN9P43378 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
PTPN9P43378 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PTPN9P43378 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PTPN9P43378 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
PTPN9P43378 HIST2H3DP1-201ENST00000401004 416 ntBASIC17.98■□□□□ 0.47
PTPN9P43378 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC17.98■□□□□ 0.47
PTPN9P43378 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC17.98■□□□□ 0.47
PTPN9P43378 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
PTPN9P43378 MSRA-206ENST00000521209 814 ntTSL 3 BASIC17.98■□□□□ 0.47
PTPN9P43378 AC021087.4-201ENST00000563761 564 ntBASIC17.98■□□□□ 0.47
PTPN9P43378 RNF151-202ENST00000569210 853 ntTSL 2 BASIC17.98■□□□□ 0.47
PTPN9P43378 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
PTPN9P43378 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC17.98■□□□□ 0.47
PTPN9P43378 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PTPN9P43378 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PTPN9P43378 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC17.98■□□□□ 0.47
PTPN9P43378 AL121761.2-201ENST00000598007 1648 ntBASIC17.98■□□□□ 0.47
PTPN9P43378 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
PTPN9P43378 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
PTPN9P43378 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC17.97■□□□□ 0.47
PTPN9P43378 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC17.97■□□□□ 0.47
PTPN9P43378 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC17.97■□□□□ 0.47
PTPN9P43378 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC17.97■□□□□ 0.47
PTPN9P43378 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
PTPN9P43378 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC17.97■□□□□ 0.47
PTPN9P43378 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
PTPN9P43378 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC17.97■□□□□ 0.47
PTPN9P43378 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC17.97■□□□□ 0.47
PTPN9P43378 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC17.97■□□□□ 0.47
PTPN9P43378 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC17.97■□□□□ 0.47
PTPN9P43378 AC139887.3-201ENST00000568585 713 ntBASIC17.97■□□□□ 0.47
PTPN9P43378 PAM16-208ENST00000573553 722 ntTSL 2 BASIC17.97■□□□□ 0.47
PTPN9P43378 AL121912.1-201ENST00000603683 238 ntBASIC17.97■□□□□ 0.47
PTPN9P43378 AL139424.1-201ENST00000607572 797 ntBASIC17.97■□□□□ 0.47
PTPN9P43378 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
PTPN9P43378 AC092053.1-201ENST00000605787 1936 ntBASIC17.97■□□□□ 0.47
PTPN9P43378 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC17.97■□□□□ 0.47
PTPN9P43378 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC17.97■□□□□ 0.47
PTPN9P43378 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
PTPN9P43378 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
PTPN9P43378 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
PTPN9P43378 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
PTPN9P43378 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
PTPN9P43378 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC17.97■□□□□ 0.47
PTPN9P43378 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
PTPN9P43378 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
PTPN9P43378 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC17.97■□□□□ 0.47
PTPN9P43378 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
PTPN9P43378 AC080080.1-201ENST00000625121 2420 ntBASIC17.97■□□□□ 0.47
PTPN9P43378 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
PTPN9P43378 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
PTPN9P43378 AL590787.1-201ENST00000568856 1315 ntBASIC17.97■□□□□ 0.47
PTPN9P43378 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC17.97■□□□□ 0.47
PTPN9P43378 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PTPN9P43378 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC17.96■□□□□ 0.47
PTPN9P43378 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
PTPN9P43378 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PTPN9P43378 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC17.96■□□□□ 0.47
PTPN9P43378 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC17.96■□□□□ 0.47
PTPN9P43378 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC17.96■□□□□ 0.47
PTPN9P43378 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
PTPN9P43378 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
PTPN9P43378 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
PTPN9P43378 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.47
PTPN9P43378 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
PTPN9P43378 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
PTPN9P43378 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
PTPN9P43378 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC17.96■□□□□ 0.47
PTPN9P43378 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC17.96■□□□□ 0.47
PTPN9P43378 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC17.96■□□□□ 0.47
PTPN9P43378 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
PTPN9P43378 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PTPN9P43378 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PTPN9P43378 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC17.96■□□□□ 0.47
PTPN9P43378 KRT126P-201ENST00000549467 1181 ntBASIC17.96■□□□□ 0.47
PTPN9P43378 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC17.96■□□□□ 0.47
PTPN9P43378 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC17.96■□□□□ 0.47
PTPN9P43378 RN7SL510P-201ENST00000581311 263 ntBASIC17.96■□□□□ 0.47
PTPN9P43378 AL691432.3-201ENST00000621860 400 ntBASIC17.96■□□□□ 0.47
PTPN9P43378 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
PTPN9P43378 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC17.96■□□□□ 0.47
PTPN9P43378 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PTPN9P43378 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PTPN9P43378 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
PTPN9P43378 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
PTPN9P43378 AC060834.1-201ENST00000443027 2032 ntBASIC17.96■□□□□ 0.47
PTPN9P43378 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
PTPN9P43378 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
PTPN9P43378 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.46
PTPN9P43378 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC17.96■□□□□ 0.46
PTPN9P43378 STX3-203ENST00000529177 1571 ntTSL 2 BASIC17.96■□□□□ 0.46
PTPN9P43378 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
PTPN9P43378 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PTPN9P43378 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC17.95■□□□□ 0.46
PTPN9P43378 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms