Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC16.93■□□□□ 0.3
PCNAP12004 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PCNAP12004 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
PCNAP12004 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
PCNAP12004 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC16.93■□□□□ 0.3
PCNAP12004 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
PCNAP12004 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PCNAP12004 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PCNAP12004 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
PCNAP12004 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PCNAP12004 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC16.92■□□□□ 0.3
PCNAP12004 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PCNAP12004 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
PCNAP12004 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
PCNAP12004 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PCNAP12004 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PCNAP12004 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PCNAP12004 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC16.92■□□□□ 0.3
PCNAP12004 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PCNAP12004 LYSMD4-203ENST00000378904 2122 ntBASIC16.92■□□□□ 0.3
PCNAP12004 AC005104.2-201ENST00000427818 678 ntBASIC16.92■□□□□ 0.3
PCNAP12004 LINC00265-3P-201ENST00000447588 903 ntBASIC16.92■□□□□ 0.3
PCNAP12004 RNF146-204ENST00000476956 884 ntTSL 2 BASIC16.92■□□□□ 0.3
PCNAP12004 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC16.92■□□□□ 0.3
PCNAP12004 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
PCNAP12004 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
PCNAP12004 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC16.92■□□□□ 0.3
PCNAP12004 AL138831.2-201ENST00000606564 490 ntBASIC16.92■□□□□ 0.3
PCNAP12004 AL353801.3-201ENST00000609898 542 ntBASIC16.92■□□□□ 0.3
PCNAP12004 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
PCNAP12004 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
PCNAP12004 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC16.92■□□□□ 0.3
PCNAP12004 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PCNAP12004 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC16.92■□□□□ 0.3
PCNAP12004 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PCNAP12004 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC16.92■□□□□ 0.3
PCNAP12004 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC16.92■□□□□ 0.3
PCNAP12004 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
PCNAP12004 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
PCNAP12004 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC16.92■□□□□ 0.3
PCNAP12004 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
PCNAP12004 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC16.92■□□□□ 0.3
PCNAP12004 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PCNAP12004 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PCNAP12004 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PCNAP12004 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PCNAP12004 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
PCNAP12004 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC16.91■□□□□ 0.3
PCNAP12004 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC16.91■□□□□ 0.3
PCNAP12004 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC16.91■□□□□ 0.3
PCNAP12004 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
PCNAP12004 UBALD1-205ENST00000590891 2641 ntBASIC16.91■□□□□ 0.3
PCNAP12004 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PCNAP12004 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
PCNAP12004 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
PCNAP12004 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC16.91■□□□□ 0.3
PCNAP12004 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
PCNAP12004 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC16.91■□□□□ 0.3
PCNAP12004 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC16.91■□□□□ 0.3
PCNAP12004 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PCNAP12004 AC246785.2-201ENST00000432512 513 ntBASIC16.91■□□□□ 0.3
PCNAP12004 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC16.91■□□□□ 0.3
PCNAP12004 TOB2P1-201ENST00000469761 992 ntBASIC16.91■□□□□ 0.3
PCNAP12004 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
PCNAP12004 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC16.91■□□□□ 0.3
PCNAP12004 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC16.91■□□□□ 0.3
PCNAP12004 AC109462.3-201ENST00000573934 613 ntBASIC16.91■□□□□ 0.3
PCNAP12004 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC16.91■□□□□ 0.3
PCNAP12004 AC069148.1-201ENST00000608741 768 ntBASIC16.91■□□□□ 0.3
PCNAP12004 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC16.91■□□□□ 0.3
PCNAP12004 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PCNAP12004 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PCNAP12004 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC16.91■□□□□ 0.3
PCNAP12004 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PCNAP12004 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
PCNAP12004 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
PCNAP12004 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
PCNAP12004 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
PCNAP12004 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PCNAP12004 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC16.91■□□□□ 0.3
PCNAP12004 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
PCNAP12004 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
PCNAP12004 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
PCNAP12004 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC16.9■□□□□ 0.3
PCNAP12004 AC233702.3-201ENST00000578656 1387 ntBASIC16.9■□□□□ 0.3
PCNAP12004 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
PCNAP12004 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
PCNAP12004 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PCNAP12004 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC16.9■□□□□ 0.3
PCNAP12004 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC16.9■□□□□ 0.3
PCNAP12004 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PCNAP12004 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PCNAP12004 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PCNAP12004 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
PCNAP12004 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
PCNAP12004 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
PCNAP12004 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
PCNAP12004 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
PCNAP12004 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
PCNAP12004 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC16.9■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms