Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CACNA1FO60840 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC21.59■■□□□ 1.05
CACNA1FO60840 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
CACNA1FO60840 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC21.59■■□□□ 1.05
CACNA1FO60840 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
CACNA1FO60840 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC21.58■■□□□ 1.05
CACNA1FO60840 LINC00895-201ENST00000629028 1637 ntBASIC21.58■■□□□ 1.05
CACNA1FO60840 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
CACNA1FO60840 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
CACNA1FO60840 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
CACNA1FO60840 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.05
CACNA1FO60840 UPF3AP3-201ENST00000420996 769 ntBASIC21.58■■□□□ 1.05
CACNA1FO60840 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC21.58■■□□□ 1.05
CACNA1FO60840 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC21.58■■□□□ 1.05
CACNA1FO60840 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC21.58■■□□□ 1.05
CACNA1FO60840 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC21.58■■□□□ 1.04
CACNA1FO60840 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
CACNA1FO60840 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
CACNA1FO60840 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CACNA1FO60840 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CACNA1FO60840 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
CACNA1FO60840 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC21.57■■□□□ 1.04
CACNA1FO60840 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
CACNA1FO60840 AC096734.2-201ENST00000562054 433 ntBASIC21.57■■□□□ 1.04
CACNA1FO60840 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC21.57■■□□□ 1.04
CACNA1FO60840 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC21.57■■□□□ 1.04
CACNA1FO60840 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CACNA1FO60840 AC005332.8-201ENST00000622750 2735 ntBASIC21.57■■□□□ 1.04
CACNA1FO60840 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
CACNA1FO60840 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CACNA1FO60840 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC21.57■■□□□ 1.04
CACNA1FO60840 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CACNA1FO60840 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC21.57■■□□□ 1.04
CACNA1FO60840 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC21.57■■□□□ 1.04
CACNA1FO60840 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CACNA1FO60840 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CACNA1FO60840 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC21.57■■□□□ 1.04
CACNA1FO60840 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
CACNA1FO60840 BX842568.4-201ENST00000421222 227 ntBASIC21.57■■□□□ 1.04
CACNA1FO60840 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
CACNA1FO60840 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC21.57■■□□□ 1.04
CACNA1FO60840 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC21.57■■□□□ 1.04
CACNA1FO60840 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC21.57■■□□□ 1.04
CACNA1FO60840 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC21.57■■□□□ 1.04
CACNA1FO60840 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC21.57■■□□□ 1.04
CACNA1FO60840 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
CACNA1FO60840 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
CACNA1FO60840 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC21.57■■□□□ 1.04
CACNA1FO60840 HARS-204ENST00000438307 1789 ntTSL 2 BASIC21.57■■□□□ 1.04
CACNA1FO60840 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC21.57■■□□□ 1.04
CACNA1FO60840 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC21.57■■□□□ 1.04
CACNA1FO60840 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC21.57■■□□□ 1.04
CACNA1FO60840 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CACNA1FO60840 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CACNA1FO60840 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CACNA1FO60840 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
CACNA1FO60840 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC21.56■■□□□ 1.04
CACNA1FO60840 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC21.56■■□□□ 1.04
CACNA1FO60840 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC21.56■■□□□ 1.04
CACNA1FO60840 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC21.56■■□□□ 1.04
CACNA1FO60840 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC21.56■■□□□ 1.04
CACNA1FO60840 MTDHP5-201ENST00000598980 586 ntBASIC21.56■■□□□ 1.04
CACNA1FO60840 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CACNA1FO60840 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC21.56■■□□□ 1.04
CACNA1FO60840 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CACNA1FO60840 LETM1P2-201ENST00000597330 2178 ntBASIC21.56■■□□□ 1.04
CACNA1FO60840 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC21.56■■□□□ 1.04
CACNA1FO60840 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC21.56■■□□□ 1.04
CACNA1FO60840 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CACNA1FO60840 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CACNA1FO60840 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC21.56■■□□□ 1.04
CACNA1FO60840 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CACNA1FO60840 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CACNA1FO60840 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CACNA1FO60840 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CACNA1FO60840 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CACNA1FO60840 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC21.56■■□□□ 1.04
CACNA1FO60840 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC21.56■■□□□ 1.04
CACNA1FO60840 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CACNA1FO60840 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CACNA1FO60840 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CACNA1FO60840 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC21.56■■□□□ 1.04
CACNA1FO60840 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC21.56■■□□□ 1.04
CACNA1FO60840 MAL2-202ENST00000531508 892 ntTSL 3 BASIC21.56■■□□□ 1.04
CACNA1FO60840 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC21.56■■□□□ 1.04
CACNA1FO60840 AL031432.2-201ENST00000566714 459 ntBASIC21.56■■□□□ 1.04
CACNA1FO60840 AL928711.1-201ENST00000570165 459 ntBASIC21.56■■□□□ 1.04
CACNA1FO60840 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC21.56■■□□□ 1.04
CACNA1FO60840 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC21.55■■□□□ 1.04
CACNA1FO60840 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC21.55■■□□□ 1.04
CACNA1FO60840 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC21.55■■□□□ 1.04
CACNA1FO60840 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC21.55■■□□□ 1.04
CACNA1FO60840 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CACNA1FO60840 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
CACNA1FO60840 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC21.55■■□□□ 1.04
CACNA1FO60840 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CACNA1FO60840 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CACNA1FO60840 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC21.55■■□□□ 1.04
CACNA1FO60840 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CACNA1FO60840 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 53.7 ms