Protein–RNA interactions for Protein: Q9Y2I6

NINL, Ninein-like protein, humanhuman

Predictions only

Length 1,382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NINLQ9Y2I6 AC211476.1-201ENST00000503899 468 ntBASIC23.57■■□□□ 1.36
NINLQ9Y2I6 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC23.57■■□□□ 1.36
NINLQ9Y2I6 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
NINLQ9Y2I6 MED16-214ENST00000617672 554 ntTSL 5 BASIC23.57■■□□□ 1.36
NINLQ9Y2I6 CITED2-204ENST00000618718 901 ntTSL 2 BASIC23.57■■□□□ 1.36
NINLQ9Y2I6 REXO1L3P-201ENST00000622202 1288 ntBASIC23.57■■□□□ 1.36
NINLQ9Y2I6 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC23.57■■□□□ 1.36
NINLQ9Y2I6 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC23.57■■□□□ 1.36
NINLQ9Y2I6 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
NINLQ9Y2I6 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC23.57■■□□□ 1.36
NINLQ9Y2I6 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC23.57■■□□□ 1.36
NINLQ9Y2I6 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
NINLQ9Y2I6 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC23.57■■□□□ 1.36
NINLQ9Y2I6 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC23.57■■□□□ 1.36
NINLQ9Y2I6 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC23.57■■□□□ 1.36
NINLQ9Y2I6 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
NINLQ9Y2I6 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC23.57■■□□□ 1.36
NINLQ9Y2I6 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC23.57■■□□□ 1.36
NINLQ9Y2I6 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC23.57■■□□□ 1.36
NINLQ9Y2I6 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC23.57■■□□□ 1.36
NINLQ9Y2I6 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
NINLQ9Y2I6 ELL2P1-201ENST00000413990 1906 ntBASIC23.57■■□□□ 1.36
NINLQ9Y2I6 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC23.57■■□□□ 1.36
NINLQ9Y2I6 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
NINLQ9Y2I6 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC23.56■■□□□ 1.36
NINLQ9Y2I6 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC23.56■■□□□ 1.36
NINLQ9Y2I6 GNAS-203ENST00000306120 1878 ntBASIC23.56■■□□□ 1.36
NINLQ9Y2I6 AC025580.3-201ENST00000617932 1424 ntBASIC23.56■■□□□ 1.36
NINLQ9Y2I6 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC23.56■■□□□ 1.36
NINLQ9Y2I6 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC23.56■■□□□ 1.36
NINLQ9Y2I6 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC23.56■■□□□ 1.36
NINLQ9Y2I6 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC23.56■■□□□ 1.36
NINLQ9Y2I6 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC23.56■■□□□ 1.36
NINLQ9Y2I6 RPL28-209ENST00000560055 670 ntTSL 3 BASIC23.56■■□□□ 1.36
NINLQ9Y2I6 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC23.56■■□□□ 1.36
NINLQ9Y2I6 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC23.56■■□□□ 1.36
NINLQ9Y2I6 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC23.56■■□□□ 1.36
NINLQ9Y2I6 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC23.56■■□□□ 1.36
NINLQ9Y2I6 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
NINLQ9Y2I6 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC23.56■■□□□ 1.36
NINLQ9Y2I6 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
NINLQ9Y2I6 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC23.56■■□□□ 1.36
NINLQ9Y2I6 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
NINLQ9Y2I6 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC23.56■■□□□ 1.36
NINLQ9Y2I6 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
NINLQ9Y2I6 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
NINLQ9Y2I6 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
NINLQ9Y2I6 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC23.56■■□□□ 1.36
NINLQ9Y2I6 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
NINLQ9Y2I6 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC23.56■■□□□ 1.36
NINLQ9Y2I6 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
NINLQ9Y2I6 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC23.55■■□□□ 1.36
NINLQ9Y2I6 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
NINLQ9Y2I6 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
NINLQ9Y2I6 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
NINLQ9Y2I6 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
NINLQ9Y2I6 LETM1P2-201ENST00000597330 2178 ntBASIC23.55■■□□□ 1.36
NINLQ9Y2I6 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC23.55■■□□□ 1.36
NINLQ9Y2I6 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
NINLQ9Y2I6 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC23.55■■□□□ 1.36
NINLQ9Y2I6 SYS1-203ENST00000414310 795 ntTSL 3 BASIC23.55■■□□□ 1.36
NINLQ9Y2I6 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC23.55■■□□□ 1.36
NINLQ9Y2I6 ACTG1P14-201ENST00000446382 1122 ntBASIC23.55■■□□□ 1.36
NINLQ9Y2I6 AC074386.1-202ENST00000463561 864 ntBASIC23.55■■□□□ 1.36
NINLQ9Y2I6 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC23.55■■□□□ 1.36
NINLQ9Y2I6 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC23.55■■□□□ 1.36
NINLQ9Y2I6 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC23.55■■□□□ 1.36
NINLQ9Y2I6 AL078644.1-201ENST00000609881 752 ntBASIC23.55■■□□□ 1.36
NINLQ9Y2I6 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC23.55■■□□□ 1.36
NINLQ9Y2I6 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC23.55■■□□□ 1.36
NINLQ9Y2I6 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
NINLQ9Y2I6 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC23.55■■□□□ 1.36
NINLQ9Y2I6 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
NINLQ9Y2I6 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
NINLQ9Y2I6 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC23.55■■□□□ 1.36
NINLQ9Y2I6 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
NINLQ9Y2I6 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
NINLQ9Y2I6 AC116353.5-201ENST00000638148 1699 ntBASIC23.55■■□□□ 1.36
NINLQ9Y2I6 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
NINLQ9Y2I6 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
NINLQ9Y2I6 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC23.54■■□□□ 1.36
NINLQ9Y2I6 DDT-204ENST00000404092 805 ntTSL 3 BASIC23.54■■□□□ 1.36
NINLQ9Y2I6 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC23.54■■□□□ 1.36
NINLQ9Y2I6 PUDP-206ENST00000540122 825 ntTSL 2 BASIC23.54■■□□□ 1.36
NINLQ9Y2I6 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC23.54■■□□□ 1.36
NINLQ9Y2I6 MIR4469-201ENST00000583919 79 ntBASIC23.54■■□□□ 1.36
NINLQ9Y2I6 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
NINLQ9Y2I6 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC23.54■■□□□ 1.36
NINLQ9Y2I6 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC23.54■■□□□ 1.36
NINLQ9Y2I6 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
NINLQ9Y2I6 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC23.54■■□□□ 1.36
NINLQ9Y2I6 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC23.54■■□□□ 1.36
NINLQ9Y2I6 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC23.54■■□□□ 1.36
NINLQ9Y2I6 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
NINLQ9Y2I6 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
NINLQ9Y2I6 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC23.54■■□□□ 1.36
NINLQ9Y2I6 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC23.54■■□□□ 1.36
NINLQ9Y2I6 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
NINLQ9Y2I6 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
NINLQ9Y2I6 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC23.53■■□□□ 1.36
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms