Protein–RNA interactions for Protein: Q9BZI7

UPF3B, Regulator of nonsense transcripts 3B, humanhuman

Known RBP Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3BQ9BZI7 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
UPF3BQ9BZI7 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
UPF3BQ9BZI7 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
UPF3BQ9BZI7 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
UPF3BQ9BZI7 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC20.72■□□□□ 0.91
UPF3BQ9BZI7 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
UPF3BQ9BZI7 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
UPF3BQ9BZI7 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
UPF3BQ9BZI7 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
UPF3BQ9BZI7 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC20.71■□□□□ 0.91
UPF3BQ9BZI7 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
UPF3BQ9BZI7 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
UPF3BQ9BZI7 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC20.71■□□□□ 0.91
UPF3BQ9BZI7 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC20.71■□□□□ 0.91
UPF3BQ9BZI7 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC20.71■□□□□ 0.91
UPF3BQ9BZI7 LINC02012-201ENST00000608206 1725 ntBASIC20.71■□□□□ 0.91
UPF3BQ9BZI7 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
UPF3BQ9BZI7 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC20.71■□□□□ 0.91
UPF3BQ9BZI7 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC20.71■□□□□ 0.91
UPF3BQ9BZI7 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
UPF3BQ9BZI7 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC20.71■□□□□ 0.91
UPF3BQ9BZI7 FAM220CP-201ENST00000395253 831 ntBASIC20.71■□□□□ 0.91
UPF3BQ9BZI7 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
UPF3BQ9BZI7 PCED1CP-201ENST00000419887 785 ntBASIC20.71■□□□□ 0.91
UPF3BQ9BZI7 AC246785.2-201ENST00000432512 513 ntBASIC20.71■□□□□ 0.91
UPF3BQ9BZI7 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC20.71■□□□□ 0.91
UPF3BQ9BZI7 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC20.71■□□□□ 0.91
UPF3BQ9BZI7 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
UPF3BQ9BZI7 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
UPF3BQ9BZI7 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
UPF3BQ9BZI7 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC20.71■□□□□ 0.91
UPF3BQ9BZI7 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
UPF3BQ9BZI7 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
UPF3BQ9BZI7 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
UPF3BQ9BZI7 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC20.7■□□□□ 0.91
UPF3BQ9BZI7 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
UPF3BQ9BZI7 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
UPF3BQ9BZI7 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
UPF3BQ9BZI7 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
UPF3BQ9BZI7 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
UPF3BQ9BZI7 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC20.7■□□□□ 0.9
UPF3BQ9BZI7 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
UPF3BQ9BZI7 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
UPF3BQ9BZI7 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
UPF3BQ9BZI7 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC20.7■□□□□ 0.9
UPF3BQ9BZI7 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
UPF3BQ9BZI7 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC20.7■□□□□ 0.9
UPF3BQ9BZI7 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC20.7■□□□□ 0.9
UPF3BQ9BZI7 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
UPF3BQ9BZI7 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
UPF3BQ9BZI7 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
UPF3BQ9BZI7 MYCLP1-201ENST00000372451 1075 ntBASIC20.7■□□□□ 0.9
UPF3BQ9BZI7 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
UPF3BQ9BZI7 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
UPF3BQ9BZI7 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
UPF3BQ9BZI7 TSSC2-201ENST00000450217 709 ntBASIC20.7■□□□□ 0.9
UPF3BQ9BZI7 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC20.7■□□□□ 0.9
UPF3BQ9BZI7 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC20.7■□□□□ 0.9
UPF3BQ9BZI7 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC20.7■□□□□ 0.9
UPF3BQ9BZI7 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC20.7■□□□□ 0.9
UPF3BQ9BZI7 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
UPF3BQ9BZI7 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.9
UPF3BQ9BZI7 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC20.7■□□□□ 0.9
UPF3BQ9BZI7 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
UPF3BQ9BZI7 KRT18P1-202ENST00000452408 1331 ntBASIC20.7■□□□□ 0.9
UPF3BQ9BZI7 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
UPF3BQ9BZI7 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
UPF3BQ9BZI7 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
UPF3BQ9BZI7 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC20.7■□□□□ 0.9
UPF3BQ9BZI7 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC20.7■□□□□ 0.9
UPF3BQ9BZI7 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
UPF3BQ9BZI7 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC20.7■□□□□ 0.9
UPF3BQ9BZI7 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
UPF3BQ9BZI7 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC20.7■□□□□ 0.9
UPF3BQ9BZI7 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
UPF3BQ9BZI7 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
UPF3BQ9BZI7 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC20.69■□□□□ 0.9
UPF3BQ9BZI7 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
UPF3BQ9BZI7 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC20.69■□□□□ 0.9
UPF3BQ9BZI7 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC20.69■□□□□ 0.9
UPF3BQ9BZI7 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
UPF3BQ9BZI7 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC20.69■□□□□ 0.9
UPF3BQ9BZI7 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC20.69■□□□□ 0.9
UPF3BQ9BZI7 PPIH-202ENST00000372549 327 ntTSL 3 BASIC20.69■□□□□ 0.9
UPF3BQ9BZI7 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
UPF3BQ9BZI7 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC20.69■□□□□ 0.9
UPF3BQ9BZI7 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC20.69■□□□□ 0.9
UPF3BQ9BZI7 ABR-204ENST00000543210 1049 ntTSL 2 BASIC20.69■□□□□ 0.9
UPF3BQ9BZI7 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
UPF3BQ9BZI7 ABR-217ENST00000572441 563 ntTSL 4 BASIC20.69■□□□□ 0.9
UPF3BQ9BZI7 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
UPF3BQ9BZI7 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC20.69■□□□□ 0.9
UPF3BQ9BZI7 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
UPF3BQ9BZI7 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
UPF3BQ9BZI7 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
UPF3BQ9BZI7 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
UPF3BQ9BZI7 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC20.69■□□□□ 0.9
UPF3BQ9BZI7 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC20.69■□□□□ 0.9
UPF3BQ9BZI7 AC233702.3-201ENST00000578656 1387 ntBASIC20.69■□□□□ 0.9
UPF3BQ9BZI7 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms