Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
PAAF1Q9BRP4 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
PAAF1Q9BRP4 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
PAAF1Q9BRP4 AC092919.2-201ENST00000623631 1645 ntBASIC18.41■□□□□ 0.54
PAAF1Q9BRP4 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
PAAF1Q9BRP4 ELL2P1-201ENST00000413990 1906 ntBASIC18.41■□□□□ 0.54
PAAF1Q9BRP4 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC18.41■□□□□ 0.54
PAAF1Q9BRP4 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
PAAF1Q9BRP4 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC18.41■□□□□ 0.54
PAAF1Q9BRP4 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
PAAF1Q9BRP4 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
PAAF1Q9BRP4 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
PAAF1Q9BRP4 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
PAAF1Q9BRP4 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC18.41■□□□□ 0.54
PAAF1Q9BRP4 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
PAAF1Q9BRP4 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
PAAF1Q9BRP4 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
PAAF1Q9BRP4 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
PAAF1Q9BRP4 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
PAAF1Q9BRP4 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
PAAF1Q9BRP4 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
PAAF1Q9BRP4 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC18.41■□□□□ 0.54
PAAF1Q9BRP4 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
PAAF1Q9BRP4 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC18.41■□□□□ 0.54
PAAF1Q9BRP4 AC074386.1-202ENST00000463561 864 ntBASIC18.41■□□□□ 0.54
PAAF1Q9BRP4 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC18.41■□□□□ 0.54
PAAF1Q9BRP4 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC18.41■□□□□ 0.54
PAAF1Q9BRP4 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC18.41■□□□□ 0.54
PAAF1Q9BRP4 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC18.41■□□□□ 0.54
PAAF1Q9BRP4 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC18.41■□□□□ 0.54
PAAF1Q9BRP4 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC18.41■□□□□ 0.54
PAAF1Q9BRP4 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
PAAF1Q9BRP4 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
PAAF1Q9BRP4 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
PAAF1Q9BRP4 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
PAAF1Q9BRP4 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
PAAF1Q9BRP4 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
PAAF1Q9BRP4 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
PAAF1Q9BRP4 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
PAAF1Q9BRP4 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
PAAF1Q9BRP4 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
PAAF1Q9BRP4 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC18.4■□□□□ 0.54
PAAF1Q9BRP4 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
PAAF1Q9BRP4 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
PAAF1Q9BRP4 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC18.4■□□□□ 0.54
PAAF1Q9BRP4 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
PAAF1Q9BRP4 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC18.4■□□□□ 0.54
PAAF1Q9BRP4 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC18.4■□□□□ 0.54
PAAF1Q9BRP4 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC18.4■□□□□ 0.54
PAAF1Q9BRP4 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC18.4■□□□□ 0.54
PAAF1Q9BRP4 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC18.4■□□□□ 0.54
PAAF1Q9BRP4 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC18.4■□□□□ 0.54
PAAF1Q9BRP4 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
PAAF1Q9BRP4 AC079781.4-201ENST00000641908 219 ntBASIC18.4■□□□□ 0.54
PAAF1Q9BRP4 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC18.4■□□□□ 0.54
PAAF1Q9BRP4 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
PAAF1Q9BRP4 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC18.4■□□□□ 0.54
PAAF1Q9BRP4 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
PAAF1Q9BRP4 GNE-204ENST00000539208 2190 ntTSL 2 BASIC18.4■□□□□ 0.54
PAAF1Q9BRP4 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC18.39■□□□□ 0.54
PAAF1Q9BRP4 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.54
PAAF1Q9BRP4 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.54
PAAF1Q9BRP4 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC18.39■□□□□ 0.54
PAAF1Q9BRP4 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.54
PAAF1Q9BRP4 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PAAF1Q9BRP4 PMS2P2-201ENST00000425039 1128 ntBASIC18.39■□□□□ 0.53
PAAF1Q9BRP4 FAM58CP-201ENST00000435741 640 ntBASIC18.39■□□□□ 0.53
PAAF1Q9BRP4 MKNK2P1-201ENST00000437526 628 ntBASIC18.39■□□□□ 0.53
PAAF1Q9BRP4 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC18.39■□□□□ 0.53
PAAF1Q9BRP4 CEND1P1-201ENST00000451006 455 ntBASIC18.39■□□□□ 0.53
PAAF1Q9BRP4 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC18.39■□□□□ 0.53
PAAF1Q9BRP4 AC091812.2-201ENST00000619081 385 ntBASIC18.39■□□□□ 0.53
PAAF1Q9BRP4 AC007064.4-201ENST00000637740 555 ntBASIC18.39■□□□□ 0.53
PAAF1Q9BRP4 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
PAAF1Q9BRP4 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PAAF1Q9BRP4 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PAAF1Q9BRP4 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
PAAF1Q9BRP4 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC18.39■□□□□ 0.53
PAAF1Q9BRP4 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PAAF1Q9BRP4 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PAAF1Q9BRP4 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PAAF1Q9BRP4 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PAAF1Q9BRP4 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PAAF1Q9BRP4 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PAAF1Q9BRP4 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
PAAF1Q9BRP4 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC18.38■□□□□ 0.53
PAAF1Q9BRP4 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PAAF1Q9BRP4 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
PAAF1Q9BRP4 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
PAAF1Q9BRP4 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
PAAF1Q9BRP4 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC18.38■□□□□ 0.53
PAAF1Q9BRP4 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
PAAF1Q9BRP4 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
PAAF1Q9BRP4 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
PAAF1Q9BRP4 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC18.38■□□□□ 0.53
PAAF1Q9BRP4 DDT-204ENST00000404092 805 ntTSL 3 BASIC18.38■□□□□ 0.53
PAAF1Q9BRP4 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PAAF1Q9BRP4 AL513480.1-201ENST00000451731 511 ntBASIC18.38■□□□□ 0.53
PAAF1Q9BRP4 AC107918.2-201ENST00000530817 355 ntBASIC18.38■□□□□ 0.53
PAAF1Q9BRP4 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC18.38■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 48 ms