Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
NKX3-1Q99801 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
NKX3-1Q99801 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
NKX3-1Q99801 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC15.19■□□□□ 0.02
NKX3-1Q99801 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
NKX3-1Q99801 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC15.19■□□□□ 0.02
NKX3-1Q99801 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC15.19■□□□□ 0.02
NKX3-1Q99801 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
NKX3-1Q99801 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
NKX3-1Q99801 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
NKX3-1Q99801 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC15.19■□□□□ 0.02
NKX3-1Q99801 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
NKX3-1Q99801 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
NKX3-1Q99801 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
NKX3-1Q99801 WT1-209ENST00000530998 2421 ntTSL 2 BASIC15.18■□□□□ 0.02
NKX3-1Q99801 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
NKX3-1Q99801 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
NKX3-1Q99801 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
NKX3-1Q99801 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
NKX3-1Q99801 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
NKX3-1Q99801 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC15.18■□□□□ 0.02
NKX3-1Q99801 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
NKX3-1Q99801 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
NKX3-1Q99801 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
NKX3-1Q99801 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
NKX3-1Q99801 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC15.18■□□□□ 0.02
NKX3-1Q99801 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
NKX3-1Q99801 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC15.18■□□□□ 0.02
NKX3-1Q99801 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
NKX3-1Q99801 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC15.18■□□□□ 0.02
NKX3-1Q99801 AC092597.1-201ENST00000487352 616 ntBASIC15.18■□□□□ 0.02
NKX3-1Q99801 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC15.18■□□□□ 0.02
NKX3-1Q99801 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC15.18■□□□□ 0.02
NKX3-1Q99801 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC15.18■□□□□ 0.02
NKX3-1Q99801 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC15.18■□□□□ 0.02
NKX3-1Q99801 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC15.18■□□□□ 0.02
NKX3-1Q99801 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC15.18■□□□□ 0.02
NKX3-1Q99801 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC15.18■□□□□ 0.02
NKX3-1Q99801 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
NKX3-1Q99801 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC15.18■□□□□ 0.02
NKX3-1Q99801 AL138966.2-201ENST00000621997 464 ntBASIC15.18■□□□□ 0.02
NKX3-1Q99801 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC15.18■□□□□ 0.02
NKX3-1Q99801 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
NKX3-1Q99801 AL662844.4-201ENST00000606367 2838 ntBASIC15.18■□□□□ 0.02
NKX3-1Q99801 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC15.18■□□□□ 0.02
NKX3-1Q99801 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC15.18■□□□□ 0.02
NKX3-1Q99801 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
NKX3-1Q99801 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC15.18■□□□□ 0.02
NKX3-1Q99801 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC15.18■□□□□ 0.02
NKX3-1Q99801 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
NKX3-1Q99801 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
NKX3-1Q99801 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
NKX3-1Q99801 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
NKX3-1Q99801 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC15.17■□□□□ 0.02
NKX3-1Q99801 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
NKX3-1Q99801 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC15.17■□□□□ 0.02
NKX3-1Q99801 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC15.17■□□□□ 0.02
NKX3-1Q99801 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
NKX3-1Q99801 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
NKX3-1Q99801 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC15.17■□□□□ 0.02
NKX3-1Q99801 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
NKX3-1Q99801 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC15.17■□□□□ 0.02
NKX3-1Q99801 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
NKX3-1Q99801 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
NKX3-1Q99801 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
NKX3-1Q99801 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
NKX3-1Q99801 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC15.17■□□□□ 0.02
NKX3-1Q99801 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
NKX3-1Q99801 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC15.17■□□□□ 0.02
NKX3-1Q99801 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
NKX3-1Q99801 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC15.17■□□□□ 0.02
NKX3-1Q99801 LGALS8-AS1-201ENST00000487567 1457 ntBASIC15.17■□□□□ 0.02
NKX3-1Q99801 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC15.17■□□□□ 0.02
NKX3-1Q99801 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC15.17■□□□□ 0.02
NKX3-1Q99801 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
NKX3-1Q99801 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC15.17■□□□□ 0.02
NKX3-1Q99801 AC112698.1-201ENST00000510299 916 ntBASIC15.17■□□□□ 0.02
NKX3-1Q99801 KRT18P35-201ENST00000510488 1269 ntBASIC15.17■□□□□ 0.02
NKX3-1Q99801 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC15.17■□□□□ 0.02
NKX3-1Q99801 AL512604.3-201ENST00000569583 964 ntBASIC15.17■□□□□ 0.02
NKX3-1Q99801 RMI2-205ENST00000576027 818 ntTSL 2 BASIC15.17■□□□□ 0.02
NKX3-1Q99801 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC15.17■□□□□ 0.02
NKX3-1Q99801 AL445228.2-201ENST00000605589 952 ntBASIC15.17■□□□□ 0.02
NKX3-1Q99801 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
NKX3-1Q99801 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
NKX3-1Q99801 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
NKX3-1Q99801 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
NKX3-1Q99801 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
NKX3-1Q99801 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC15.17■□□□□ 0.02
NKX3-1Q99801 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
NKX3-1Q99801 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC15.17■□□□□ 0.02
NKX3-1Q99801 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
NKX3-1Q99801 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
NKX3-1Q99801 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
NKX3-1Q99801 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
NKX3-1Q99801 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
NKX3-1Q99801 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
NKX3-1Q99801 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
NKX3-1Q99801 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
NKX3-1Q99801 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms