Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC20.45■□□□□ 0.86
SYNE3Q6ZMZ3 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
SYNE3Q6ZMZ3 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC20.45■□□□□ 0.86
SYNE3Q6ZMZ3 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
SYNE3Q6ZMZ3 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC20.45■□□□□ 0.86
SYNE3Q6ZMZ3 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
SYNE3Q6ZMZ3 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SYNE3Q6ZMZ3 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SYNE3Q6ZMZ3 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SYNE3Q6ZMZ3 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SYNE3Q6ZMZ3 TPR-209ENST00000613151 2478 ntTSL 5 BASIC20.44■□□□□ 0.86
SYNE3Q6ZMZ3 AC009336.1-201ENST00000608941 1553 ntBASIC20.44■□□□□ 0.86
SYNE3Q6ZMZ3 EMD-201ENST00000369835 966 ntTSL 3 BASIC20.44■□□□□ 0.86
SYNE3Q6ZMZ3 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
SYNE3Q6ZMZ3 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC20.44■□□□□ 0.86
SYNE3Q6ZMZ3 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
SYNE3Q6ZMZ3 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC20.44■□□□□ 0.86
SYNE3Q6ZMZ3 AL023806.1-201ENST00000603994 1649 ntBASIC20.44■□□□□ 0.86
SYNE3Q6ZMZ3 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC20.44■□□□□ 0.86
SYNE3Q6ZMZ3 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
SYNE3Q6ZMZ3 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
SYNE3Q6ZMZ3 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SYNE3Q6ZMZ3 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
SYNE3Q6ZMZ3 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC20.44■□□□□ 0.86
SYNE3Q6ZMZ3 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
SYNE3Q6ZMZ3 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC20.44■□□□□ 0.86
SYNE3Q6ZMZ3 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SYNE3Q6ZMZ3 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SYNE3Q6ZMZ3 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
SYNE3Q6ZMZ3 AP005117.1-201ENST00000584346 1413 ntBASIC20.44■□□□□ 0.86
SYNE3Q6ZMZ3 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
SYNE3Q6ZMZ3 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
SYNE3Q6ZMZ3 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
SYNE3Q6ZMZ3 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC20.43■□□□□ 0.86
SYNE3Q6ZMZ3 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
SYNE3Q6ZMZ3 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC20.43■□□□□ 0.86
SYNE3Q6ZMZ3 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
SYNE3Q6ZMZ3 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SYNE3Q6ZMZ3 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC20.43■□□□□ 0.86
SYNE3Q6ZMZ3 ENSA-206ENST00000361631 725 ntTSL 2 BASIC20.43■□□□□ 0.86
SYNE3Q6ZMZ3 LSM5-204ENST00000409909 740 ntTSL 2 BASIC20.43■□□□□ 0.86
SYNE3Q6ZMZ3 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC20.43■□□□□ 0.86
SYNE3Q6ZMZ3 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC20.43■□□□□ 0.86
SYNE3Q6ZMZ3 TBCB-205ENST00000585746 875 ntTSL 3 BASIC20.43■□□□□ 0.86
SYNE3Q6ZMZ3 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
SYNE3Q6ZMZ3 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
SYNE3Q6ZMZ3 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
SYNE3Q6ZMZ3 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC20.43■□□□□ 0.86
SYNE3Q6ZMZ3 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
SYNE3Q6ZMZ3 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SYNE3Q6ZMZ3 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
SYNE3Q6ZMZ3 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
SYNE3Q6ZMZ3 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
SYNE3Q6ZMZ3 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
SYNE3Q6ZMZ3 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
SYNE3Q6ZMZ3 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
SYNE3Q6ZMZ3 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC20.43■□□□□ 0.86
SYNE3Q6ZMZ3 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SYNE3Q6ZMZ3 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
SYNE3Q6ZMZ3 CROCCP2-202ENST00000412962 2773 ntBASIC20.42■□□□□ 0.86
SYNE3Q6ZMZ3 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC20.42■□□□□ 0.86
SYNE3Q6ZMZ3 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
SYNE3Q6ZMZ3 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SYNE3Q6ZMZ3 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC20.42■□□□□ 0.86
SYNE3Q6ZMZ3 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC20.42■□□□□ 0.86
SYNE3Q6ZMZ3 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SYNE3Q6ZMZ3 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SYNE3Q6ZMZ3 AL020989.1-201ENST00000422979 469 ntBASIC20.42■□□□□ 0.86
SYNE3Q6ZMZ3 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SYNE3Q6ZMZ3 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC20.42■□□□□ 0.86
SYNE3Q6ZMZ3 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC20.42■□□□□ 0.86
SYNE3Q6ZMZ3 AP001269.4-201ENST00000609611 512 ntBASIC20.42■□□□□ 0.86
SYNE3Q6ZMZ3 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC20.42■□□□□ 0.86
SYNE3Q6ZMZ3 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC20.42■□□□□ 0.86
SYNE3Q6ZMZ3 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC20.42■□□□□ 0.86
SYNE3Q6ZMZ3 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC20.42■□□□□ 0.86
SYNE3Q6ZMZ3 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
SYNE3Q6ZMZ3 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
SYNE3Q6ZMZ3 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
SYNE3Q6ZMZ3 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
SYNE3Q6ZMZ3 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SYNE3Q6ZMZ3 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC20.42■□□□□ 0.86
SYNE3Q6ZMZ3 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SYNE3Q6ZMZ3 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC20.42■□□□□ 0.86
SYNE3Q6ZMZ3 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SYNE3Q6ZMZ3 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC20.41■□□□□ 0.86
SYNE3Q6ZMZ3 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC20.41■□□□□ 0.86
SYNE3Q6ZMZ3 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SYNE3Q6ZMZ3 BANP-227ENST00000626016 2144 ntTSL 2 BASIC20.41■□□□□ 0.86
SYNE3Q6ZMZ3 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
SYNE3Q6ZMZ3 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SYNE3Q6ZMZ3 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
SYNE3Q6ZMZ3 RBM17P3-201ENST00000417687 1192 ntBASIC20.41■□□□□ 0.86
SYNE3Q6ZMZ3 SIGLEC30P-201ENST00000455569 941 ntBASIC20.41■□□□□ 0.86
SYNE3Q6ZMZ3 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC20.41■□□□□ 0.86
SYNE3Q6ZMZ3 AC106795.1-205ENST00000512851 1056 ntBASIC20.41■□□□□ 0.86
SYNE3Q6ZMZ3 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC20.41■□□□□ 0.86
SYNE3Q6ZMZ3 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC20.41■□□□□ 0.86
SYNE3Q6ZMZ3 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC20.41■□□□□ 0.86
SYNE3Q6ZMZ3 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC20.41■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 57.1 ms