Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
USP39Q53GS9 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC17.64■□□□□ 0.41
USP39Q53GS9 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC17.64■□□□□ 0.41
USP39Q53GS9 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
USP39Q53GS9 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
USP39Q53GS9 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
USP39Q53GS9 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
USP39Q53GS9 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
USP39Q53GS9 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC17.64■□□□□ 0.41
USP39Q53GS9 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC17.64■□□□□ 0.41
USP39Q53GS9 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC17.64■□□□□ 0.41
USP39Q53GS9 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
USP39Q53GS9 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
USP39Q53GS9 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
USP39Q53GS9 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
USP39Q53GS9 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC17.63■□□□□ 0.41
USP39Q53GS9 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
USP39Q53GS9 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
USP39Q53GS9 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC17.63■□□□□ 0.41
USP39Q53GS9 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC17.63■□□□□ 0.41
USP39Q53GS9 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC17.63■□□□□ 0.41
USP39Q53GS9 CNN2P11-201ENST00000429351 262 ntBASIC17.63■□□□□ 0.41
USP39Q53GS9 SIGLEC30P-201ENST00000455569 941 ntBASIC17.63■□□□□ 0.41
USP39Q53GS9 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
USP39Q53GS9 CYMP-203ENST00000474680 1263 ntBASIC17.63■□□□□ 0.41
USP39Q53GS9 ALG1L5P-201ENST00000482043 771 ntBASIC17.63■□□□□ 0.41
USP39Q53GS9 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
USP39Q53GS9 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC17.63■□□□□ 0.41
USP39Q53GS9 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC17.63■□□□□ 0.41
USP39Q53GS9 CYB561-217ENST00000582997 877 ntTSL 5 BASIC17.63■□□□□ 0.41
USP39Q53GS9 AC008667.4-201ENST00000607370 168 ntBASIC17.63■□□□□ 0.41
USP39Q53GS9 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC17.63■□□□□ 0.41
USP39Q53GS9 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC17.63■□□□□ 0.41
USP39Q53GS9 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC17.63■□□□□ 0.41
USP39Q53GS9 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
USP39Q53GS9 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC17.63■□□□□ 0.41
USP39Q53GS9 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
USP39Q53GS9 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
USP39Q53GS9 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC17.63■□□□□ 0.41
USP39Q53GS9 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
USP39Q53GS9 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
USP39Q53GS9 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
USP39Q53GS9 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
USP39Q53GS9 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
USP39Q53GS9 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
USP39Q53GS9 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
USP39Q53GS9 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
USP39Q53GS9 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
USP39Q53GS9 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
USP39Q53GS9 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC17.62■□□□□ 0.41
USP39Q53GS9 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
USP39Q53GS9 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
USP39Q53GS9 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
USP39Q53GS9 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
USP39Q53GS9 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
USP39Q53GS9 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC17.62■□□□□ 0.41
USP39Q53GS9 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC17.62■□□□□ 0.41
USP39Q53GS9 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC17.62■□□□□ 0.41
USP39Q53GS9 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
USP39Q53GS9 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC17.62■□□□□ 0.41
USP39Q53GS9 HCG4B-203ENST00000450128 991 ntBASIC17.62■□□□□ 0.41
USP39Q53GS9 RPS15P9-201ENST00000494093 319 ntBASIC17.62■□□□□ 0.41
USP39Q53GS9 IGHV3-65-201ENST00000523210 341 ntBASIC17.62■□□□□ 0.41
USP39Q53GS9 RFPL4AP1-201ENST00000530883 850 ntBASIC17.62■□□□□ 0.41
USP39Q53GS9 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC17.62■□□□□ 0.41
USP39Q53GS9 AC018845.2-201ENST00000568326 409 ntBASIC17.62■□□□□ 0.41
USP39Q53GS9 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC17.62■□□□□ 0.41
USP39Q53GS9 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC17.62■□□□□ 0.41
USP39Q53GS9 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC17.62■□□□□ 0.41
USP39Q53GS9 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
USP39Q53GS9 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
USP39Q53GS9 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
USP39Q53GS9 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
USP39Q53GS9 AL353593.2-201ENST00000602529 1483 ntBASIC17.62■□□□□ 0.41
USP39Q53GS9 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
USP39Q53GS9 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
USP39Q53GS9 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC17.62■□□□□ 0.41
USP39Q53GS9 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC17.62■□□□□ 0.41
USP39Q53GS9 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
USP39Q53GS9 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
USP39Q53GS9 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
USP39Q53GS9 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC17.61■□□□□ 0.41
USP39Q53GS9 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC17.61■□□□□ 0.41
USP39Q53GS9 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
USP39Q53GS9 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
USP39Q53GS9 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC17.61■□□□□ 0.41
USP39Q53GS9 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC17.61■□□□□ 0.41
USP39Q53GS9 SIRPAP1-201ENST00000448467 1770 ntBASIC17.61■□□□□ 0.41
USP39Q53GS9 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
USP39Q53GS9 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
USP39Q53GS9 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
USP39Q53GS9 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
USP39Q53GS9 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC17.61■□□□□ 0.41
USP39Q53GS9 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC17.61■□□□□ 0.41
USP39Q53GS9 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC17.61■□□□□ 0.41
USP39Q53GS9 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC17.61■□□□□ 0.41
USP39Q53GS9 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
USP39Q53GS9 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
USP39Q53GS9 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
USP39Q53GS9 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms