Protein–RNA interactions for Protein: Q02539

HIST1H1A, Histone H1.1, humanhuman

Predicted RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIST1H1AQ02539 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
HIST1H1AQ02539 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
HIST1H1AQ02539 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
HIST1H1AQ02539 TERF1P1-201ENST00000311003 1181 ntBASIC13.34□□□□□ -0.27
HIST1H1AQ02539 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC13.34□□□□□ -0.27
HIST1H1AQ02539 TSPY12P-201ENST00000421279 868 ntBASIC13.34□□□□□ -0.27
HIST1H1AQ02539 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC13.34□□□□□ -0.27
HIST1H1AQ02539 TEN1-204ENST00000588202 862 ntTSL 3 BASIC13.34□□□□□ -0.27
HIST1H1AQ02539 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
HIST1H1AQ02539 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC13.34□□□□□ -0.27
HIST1H1AQ02539 AC011558.1-201ENST00000623459 338 ntBASIC13.34□□□□□ -0.27
HIST1H1AQ02539 AC079602.3-201ENST00000623931 403 ntBASIC13.34□□□□□ -0.27
HIST1H1AQ02539 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
HIST1H1AQ02539 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
HIST1H1AQ02539 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
HIST1H1AQ02539 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
HIST1H1AQ02539 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC13.34□□□□□ -0.27
HIST1H1AQ02539 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
HIST1H1AQ02539 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
HIST1H1AQ02539 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
HIST1H1AQ02539 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC13.34□□□□□ -0.27
HIST1H1AQ02539 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC13.34□□□□□ -0.27
HIST1H1AQ02539 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
HIST1H1AQ02539 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC13.34□□□□□ -0.27
HIST1H1AQ02539 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
HIST1H1AQ02539 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC13.34□□□□□ -0.27
HIST1H1AQ02539 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
HIST1H1AQ02539 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
HIST1H1AQ02539 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC13.34□□□□□ -0.27
HIST1H1AQ02539 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.27
HIST1H1AQ02539 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC13.33□□□□□ -0.27
HIST1H1AQ02539 ABR-203ENST00000536794 2213 ntTSL 2 BASIC13.33□□□□□ -0.27
HIST1H1AQ02539 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC13.33□□□□□ -0.27
HIST1H1AQ02539 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.27
HIST1H1AQ02539 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC13.33□□□□□ -0.27
HIST1H1AQ02539 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC13.33□□□□□ -0.27
HIST1H1AQ02539 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
HIST1H1AQ02539 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HIST1H1AQ02539 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
HIST1H1AQ02539 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC13.33□□□□□ -0.28
HIST1H1AQ02539 UBALD1-205ENST00000590891 2641 ntBASIC13.33□□□□□ -0.28
HIST1H1AQ02539 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC13.33□□□□□ -0.28
HIST1H1AQ02539 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HIST1H1AQ02539 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
HIST1H1AQ02539 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
HIST1H1AQ02539 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
HIST1H1AQ02539 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HIST1H1AQ02539 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
HIST1H1AQ02539 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HIST1H1AQ02539 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
HIST1H1AQ02539 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HIST1H1AQ02539 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC13.33□□□□□ -0.28
HIST1H1AQ02539 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
HIST1H1AQ02539 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
HIST1H1AQ02539 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
HIST1H1AQ02539 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC13.33□□□□□ -0.28
HIST1H1AQ02539 YBX1P2-201ENST00000489612 999 ntBASIC13.33□□□□□ -0.28
HIST1H1AQ02539 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HIST1H1AQ02539 ZNF444P1-201ENST00000559497 298 ntBASIC13.33□□□□□ -0.28
HIST1H1AQ02539 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC13.33□□□□□ -0.28
HIST1H1AQ02539 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC13.33□□□□□ -0.28
HIST1H1AQ02539 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC13.33□□□□□ -0.28
HIST1H1AQ02539 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
HIST1H1AQ02539 AC004263.2-201ENST00000617183 678 ntBASIC13.33□□□□□ -0.28
HIST1H1AQ02539 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC13.33□□□□□ -0.28
HIST1H1AQ02539 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
HIST1H1AQ02539 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC13.33□□□□□ -0.28
HIST1H1AQ02539 PCDHB19P-201ENST00000570871 2371 ntBASIC13.33□□□□□ -0.28
HIST1H1AQ02539 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
HIST1H1AQ02539 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HIST1H1AQ02539 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
HIST1H1AQ02539 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HIST1H1AQ02539 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HIST1H1AQ02539 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
HIST1H1AQ02539 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC13.33□□□□□ -0.28
HIST1H1AQ02539 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC13.33□□□□□ -0.28
HIST1H1AQ02539 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
HIST1H1AQ02539 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC13.33□□□□□ -0.28
HIST1H1AQ02539 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
HIST1H1AQ02539 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HIST1H1AQ02539 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC13.33□□□□□ -0.28
HIST1H1AQ02539 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
HIST1H1AQ02539 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
HIST1H1AQ02539 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
HIST1H1AQ02539 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HIST1H1AQ02539 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HIST1H1AQ02539 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC13.32□□□□□ -0.28
HIST1H1AQ02539 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC13.32□□□□□ -0.28
HIST1H1AQ02539 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
HIST1H1AQ02539 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC13.32□□□□□ -0.28
HIST1H1AQ02539 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC13.32□□□□□ -0.28
HIST1H1AQ02539 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HIST1H1AQ02539 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HIST1H1AQ02539 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC13.32□□□□□ -0.28
HIST1H1AQ02539 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC13.32□□□□□ -0.28
HIST1H1AQ02539 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC13.32□□□□□ -0.28
HIST1H1AQ02539 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC13.32□□□□□ -0.28
HIST1H1AQ02539 HLA-J-201ENST00000462773 1622 ntBASIC13.32□□□□□ -0.28
HIST1H1AQ02539 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC13.32□□□□□ -0.28
HIST1H1AQ02539 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms