Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC17.15■□□□□ 0.34
CXCL12P48061 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
CXCL12P48061 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
CXCL12P48061 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CXCL12P48061 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC17.15■□□□□ 0.34
CXCL12P48061 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CXCL12P48061 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC17.15■□□□□ 0.34
CXCL12P48061 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
CXCL12P48061 GOLGA6L11P-201ENST00000417252 1298 ntBASIC17.15■□□□□ 0.34
CXCL12P48061 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC17.15■□□□□ 0.34
CXCL12P48061 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC17.15■□□□□ 0.34
CXCL12P48061 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC17.15■□□□□ 0.34
CXCL12P48061 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC17.15■□□□□ 0.34
CXCL12P48061 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC17.15■□□□□ 0.34
CXCL12P48061 AC097493.3-201ENST00000509725 367 ntBASIC17.15■□□□□ 0.34
CXCL12P48061 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC17.15■□□□□ 0.34
CXCL12P48061 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC17.15■□□□□ 0.34
CXCL12P48061 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC17.15■□□□□ 0.34
CXCL12P48061 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CXCL12P48061 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
CXCL12P48061 AC084121.4-201ENST00000641598 221 ntBASIC17.15■□□□□ 0.34
CXCL12P48061 AF228730.8-201ENST00000642140 221 ntBASIC17.15■□□□□ 0.34
CXCL12P48061 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
CXCL12P48061 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
CXCL12P48061 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CXCL12P48061 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC17.15■□□□□ 0.34
CXCL12P48061 REXO1L9P-201ENST00000604264 2108 ntBASIC17.15■□□□□ 0.34
CXCL12P48061 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC17.15■□□□□ 0.34
CXCL12P48061 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
CXCL12P48061 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
CXCL12P48061 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
CXCL12P48061 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CXCL12P48061 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC17.14■□□□□ 0.34
CXCL12P48061 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
CXCL12P48061 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CXCL12P48061 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CXCL12P48061 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
CXCL12P48061 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CXCL12P48061 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC17.14■□□□□ 0.33
CXCL12P48061 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CXCL12P48061 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC17.14■□□□□ 0.33
CXCL12P48061 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CXCL12P48061 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
CXCL12P48061 GRAP-202ENST00000395635 834 ntTSL 2 BASIC17.14■□□□□ 0.33
CXCL12P48061 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC17.14■□□□□ 0.33
CXCL12P48061 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC17.14■□□□□ 0.33
CXCL12P48061 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC17.14■□□□□ 0.33
CXCL12P48061 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC17.14■□□□□ 0.33
CXCL12P48061 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC17.14■□□□□ 0.33
CXCL12P48061 AP005018.1-201ENST00000525475 301 ntBASIC17.14■□□□□ 0.33
CXCL12P48061 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
CXCL12P48061 AL009183.1-201ENST00000603760 355 ntBASIC17.14■□□□□ 0.33
CXCL12P48061 MIR6080-201ENST00000617359 66 ntBASIC17.14■□□□□ 0.33
CXCL12P48061 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC17.14■□□□□ 0.33
CXCL12P48061 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CXCL12P48061 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CXCL12P48061 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CXCL12P48061 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
CXCL12P48061 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
CXCL12P48061 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CXCL12P48061 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CXCL12P48061 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC17.14■□□□□ 0.33
CXCL12P48061 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CXCL12P48061 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
CXCL12P48061 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC17.13■□□□□ 0.33
CXCL12P48061 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
CXCL12P48061 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CXCL12P48061 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC17.13■□□□□ 0.33
CXCL12P48061 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CXCL12P48061 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC17.13■□□□□ 0.33
CXCL12P48061 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC17.13■□□□□ 0.33
CXCL12P48061 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CXCL12P48061 KRT18P55-202ENST00000578578 1546 ntBASIC17.13■□□□□ 0.33
CXCL12P48061 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC17.13■□□□□ 0.33
CXCL12P48061 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
CXCL12P48061 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC17.13■□□□□ 0.33
CXCL12P48061 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CXCL12P48061 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC17.13■□□□□ 0.33
CXCL12P48061 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC17.13■□□□□ 0.33
CXCL12P48061 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC17.13■□□□□ 0.33
CXCL12P48061 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CXCL12P48061 CRB3P1-201ENST00000449338 276 ntBASIC17.13■□□□□ 0.33
CXCL12P48061 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CXCL12P48061 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC17.13■□□□□ 0.33
CXCL12P48061 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC17.13■□□□□ 0.33
CXCL12P48061 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC17.13■□□□□ 0.33
CXCL12P48061 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC17.13■□□□□ 0.33
CXCL12P48061 AC005412.3-201ENST00000580309 715 ntBASIC17.13■□□□□ 0.33
CXCL12P48061 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC17.13■□□□□ 0.33
CXCL12P48061 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CXCL12P48061 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
CXCL12P48061 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC17.13■□□□□ 0.33
CXCL12P48061 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC17.13■□□□□ 0.33
CXCL12P48061 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC17.13■□□□□ 0.33
CXCL12P48061 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC17.13■□□□□ 0.33
CXCL12P48061 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
CXCL12P48061 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC17.13■□□□□ 0.33
CXCL12P48061 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC17.13■□□□□ 0.33
CXCL12P48061 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CXCL12P48061 STK4-201ENST00000372801 2038 ntTSL 2 BASIC17.13■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms