Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 NAA50-208ENST00000497255 789 ntTSL 5 BASIC28.69■■■□□ 2.18
CUX1P39880 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC28.69■■■□□ 2.18
CUX1P39880 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC28.69■■■□□ 2.18
CUX1P39880 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC28.69■■■□□ 2.18
CUX1P39880 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC28.69■■■□□ 2.18
CUX1P39880 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC28.69■■■□□ 2.18
CUX1P39880 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC28.69■■■□□ 2.18
CUX1P39880 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC28.69■■■□□ 2.18
CUX1P39880 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC28.69■■■□□ 2.18
CUX1P39880 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC28.69■■■□□ 2.18
CUX1P39880 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC28.69■■■□□ 2.18
CUX1P39880 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC28.69■■■□□ 2.18
CUX1P39880 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC28.69■■■□□ 2.18
CUX1P39880 NARF-206ENST00000457415 1668 ntTSL 5 BASIC28.68■■■□□ 2.18
CUX1P39880 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
CUX1P39880 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
CUX1P39880 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC28.68■■■□□ 2.18
CUX1P39880 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC28.68■■■□□ 2.18
CUX1P39880 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC28.68■■■□□ 2.18
CUX1P39880 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
CUX1P39880 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC28.68■■■□□ 2.18
CUX1P39880 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC28.68■■■□□ 2.18
CUX1P39880 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC28.68■■■□□ 2.18
CUX1P39880 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC28.68■■■□□ 2.18
CUX1P39880 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC28.68■■■□□ 2.18
CUX1P39880 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC28.68■■■□□ 2.18
CUX1P39880 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC28.68■■■□□ 2.18
CUX1P39880 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC28.68■■■□□ 2.18
CUX1P39880 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC28.68■■■□□ 2.18
CUX1P39880 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC28.68■■■□□ 2.18
CUX1P39880 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
CUX1P39880 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
CUX1P39880 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC28.67■■■□□ 2.18
CUX1P39880 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC28.67■■■□□ 2.18
CUX1P39880 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC28.67■■■□□ 2.18
CUX1P39880 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC28.67■■■□□ 2.18
CUX1P39880 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC28.67■■■□□ 2.18
CUX1P39880 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC28.67■■■□□ 2.18
CUX1P39880 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
CUX1P39880 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC28.67■■■□□ 2.18
CUX1P39880 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC28.67■■■□□ 2.18
CUX1P39880 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC28.67■■■□□ 2.18
CUX1P39880 AC241585.1-201ENST00000433527 519 ntBASIC28.67■■■□□ 2.18
CUX1P39880 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC28.67■■■□□ 2.18
CUX1P39880 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC28.67■■■□□ 2.18
CUX1P39880 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC28.67■■■□□ 2.18
CUX1P39880 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC28.67■■■□□ 2.18
CUX1P39880 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
CUX1P39880 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC28.66■■■□□ 2.18
CUX1P39880 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC28.66■■■□□ 2.18
CUX1P39880 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC28.66■■■□□ 2.18
CUX1P39880 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC28.66■■■□□ 2.18
CUX1P39880 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC28.66■■■□□ 2.18
CUX1P39880 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC28.66■■■□□ 2.18
CUX1P39880 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC28.66■■■□□ 2.18
CUX1P39880 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC28.66■■■□□ 2.18
CUX1P39880 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC28.66■■■□□ 2.18
CUX1P39880 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC28.66■■■□□ 2.18
CUX1P39880 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC28.66■■■□□ 2.18
CUX1P39880 MIR4453-201ENST00000584019 89 ntBASIC28.66■■■□□ 2.18
CUX1P39880 COQ4-205ENST00000609948 956 ntTSL 2 BASIC28.66■■■□□ 2.18
CUX1P39880 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC28.66■■■□□ 2.18
CUX1P39880 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
CUX1P39880 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC28.66■■■□□ 2.18
CUX1P39880 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
CUX1P39880 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC28.65■■■□□ 2.18
CUX1P39880 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC28.65■■■□□ 2.18
CUX1P39880 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC28.65■■■□□ 2.18
CUX1P39880 EDF1-203ENST00000371649 790 ntTSL 2 BASIC28.65■■■□□ 2.18
CUX1P39880 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC28.65■■■□□ 2.18
CUX1P39880 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC28.65■■■□□ 2.18
CUX1P39880 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC28.65■■■□□ 2.18
CUX1P39880 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC28.65■■■□□ 2.18
CUX1P39880 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC28.65■■■□□ 2.18
CUX1P39880 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC28.65■■■□□ 2.18
CUX1P39880 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC28.65■■■□□ 2.18
CUX1P39880 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC28.65■■■□□ 2.18
CUX1P39880 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
CUX1P39880 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC28.65■■■□□ 2.18
CUX1P39880 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
CUX1P39880 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
CUX1P39880 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC28.65■■■□□ 2.18
CUX1P39880 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC28.64■■■□□ 2.18
CUX1P39880 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC28.64■■■□□ 2.18
CUX1P39880 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC28.64■■■□□ 2.18
CUX1P39880 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC28.64■■■□□ 2.18
CUX1P39880 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC28.64■■■□□ 2.18
CUX1P39880 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC28.64■■■□□ 2.18
CUX1P39880 RN7SL692P-201ENST00000464677 288 ntBASIC28.64■■■□□ 2.18
CUX1P39880 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC28.64■■■□□ 2.18
CUX1P39880 AC091167.2-201ENST00000579581 588 ntBASIC28.64■■■□□ 2.18
CUX1P39880 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC28.64■■■□□ 2.18
CUX1P39880 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC28.64■■■□□ 2.18
CUX1P39880 AC073592.8-201ENST00000624126 511 ntBASIC28.64■■■□□ 2.18
CUX1P39880 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
CUX1P39880 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC28.64■■■□□ 2.18
CUX1P39880 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
CUX1P39880 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC28.64■■■□□ 2.18
CUX1P39880 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC28.64■■■□□ 2.18
CUX1P39880 AC090164.3-201ENST00000610780 2143 ntBASIC28.64■■■□□ 2.18
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms