Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC17.29■□□□□ 0.36
MSH3P20585 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
MSH3P20585 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
MSH3P20585 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
MSH3P20585 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC17.29■□□□□ 0.36
MSH3P20585 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
MSH3P20585 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC17.29■□□□□ 0.36
MSH3P20585 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
MSH3P20585 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
MSH3P20585 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
MSH3P20585 TLE1-202ENST00000376484 666 ntTSL 3 BASIC17.29■□□□□ 0.36
MSH3P20585 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC17.29■□□□□ 0.36
MSH3P20585 AL020989.1-201ENST00000422979 469 ntBASIC17.29■□□□□ 0.36
MSH3P20585 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC17.29■□□□□ 0.36
MSH3P20585 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC17.29■□□□□ 0.36
MSH3P20585 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC17.29■□□□□ 0.36
MSH3P20585 BMF-207ENST00000559701 630 ntTSL 3 BASIC17.29■□□□□ 0.36
MSH3P20585 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC17.29■□□□□ 0.36
MSH3P20585 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC17.29■□□□□ 0.36
MSH3P20585 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC17.29■□□□□ 0.36
MSH3P20585 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC17.29■□□□□ 0.36
MSH3P20585 AL355877.3-201ENST00000622820 899 ntBASIC17.29■□□□□ 0.36
MSH3P20585 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC17.29■□□□□ 0.36
MSH3P20585 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
MSH3P20585 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC17.29■□□□□ 0.36
MSH3P20585 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC17.29■□□□□ 0.36
MSH3P20585 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC17.29■□□□□ 0.36
MSH3P20585 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
MSH3P20585 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
MSH3P20585 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
MSH3P20585 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC17.29■□□□□ 0.36
MSH3P20585 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
MSH3P20585 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC17.29■□□□□ 0.36
MSH3P20585 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
MSH3P20585 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
MSH3P20585 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
MSH3P20585 AC009336.1-201ENST00000608941 1553 ntBASIC17.28■□□□□ 0.36
MSH3P20585 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
MSH3P20585 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC17.28■□□□□ 0.36
MSH3P20585 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
MSH3P20585 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
MSH3P20585 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
MSH3P20585 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
MSH3P20585 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC17.28■□□□□ 0.36
MSH3P20585 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
MSH3P20585 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC17.28■□□□□ 0.36
MSH3P20585 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC17.28■□□□□ 0.36
MSH3P20585 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
MSH3P20585 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC17.28■□□□□ 0.36
MSH3P20585 SCARNA2-201ENST00000458748 420 ntBASIC17.28■□□□□ 0.36
MSH3P20585 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
MSH3P20585 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
MSH3P20585 AF238378.1-201ENST00000526806 358 ntBASIC17.28■□□□□ 0.36
MSH3P20585 TK1-204ENST00000590430 683 ntTSL 3 BASIC17.28■□□□□ 0.36
MSH3P20585 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC17.28■□□□□ 0.36
MSH3P20585 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
MSH3P20585 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
MSH3P20585 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
MSH3P20585 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
MSH3P20585 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC17.28■□□□□ 0.36
MSH3P20585 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC17.28■□□□□ 0.36
MSH3P20585 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC17.28■□□□□ 0.36
MSH3P20585 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC17.28■□□□□ 0.36
MSH3P20585 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
MSH3P20585 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
MSH3P20585 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
MSH3P20585 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
MSH3P20585 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
MSH3P20585 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
MSH3P20585 PAN3-AS1-201ENST00000563843 1351 ntBASIC17.28■□□□□ 0.36
MSH3P20585 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC17.27■□□□□ 0.36
MSH3P20585 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
MSH3P20585 AC106820.2-201ENST00000563775 3264 ntBASIC17.27■□□□□ 0.36
MSH3P20585 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
MSH3P20585 AL356309.3-201ENST00000624132 1934 ntBASIC17.27■□□□□ 0.36
MSH3P20585 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
MSH3P20585 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC17.27■□□□□ 0.36
MSH3P20585 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
MSH3P20585 AC141586.5-201ENST00000624546 2050 ntBASIC17.27■□□□□ 0.36
MSH3P20585 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
MSH3P20585 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
MSH3P20585 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
MSH3P20585 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
MSH3P20585 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
MSH3P20585 PP12613-201ENST00000424958 2230 ntBASIC17.27■□□□□ 0.36
MSH3P20585 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC17.27■□□□□ 0.36
MSH3P20585 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
MSH3P20585 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC17.27■□□□□ 0.36
MSH3P20585 AC046185.3-201ENST00000623228 1824 ntBASIC17.27■□□□□ 0.36
MSH3P20585 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC17.27■□□□□ 0.36
MSH3P20585 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
MSH3P20585 SPDYE21P-201ENST00000413323 827 ntBASIC17.27■□□□□ 0.36
MSH3P20585 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC17.27■□□□□ 0.36
MSH3P20585 TPM4P1-201ENST00000436100 807 ntBASIC17.27■□□□□ 0.36
MSH3P20585 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
MSH3P20585 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
MSH3P20585 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC17.27■□□□□ 0.36
MSH3P20585 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC17.27■□□□□ 0.36
MSH3P20585 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC17.27■□□□□ 0.36
MSH3P20585 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC17.27■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms