Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 AC112698.1-201ENST00000510299 916 ntBASIC19.17■□□□□ 0.66
TPM1P09493 TK1-205ENST00000590862 642 ntTSL 3 BASIC19.17■□□□□ 0.66
TPM1P09493 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
TPM1P09493 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
TPM1P09493 SNX21-213ENST00000614929 587 ntTSL 5 BASIC19.17■□□□□ 0.66
TPM1P09493 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
TPM1P09493 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TPM1P09493 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TPM1P09493 RHBDF1P1-201ENST00000427504 1941 ntBASIC19.17■□□□□ 0.66
TPM1P09493 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TPM1P09493 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TPM1P09493 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
TPM1P09493 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TPM1P09493 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TPM1P09493 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC19.16■□□□□ 0.66
TPM1P09493 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
TPM1P09493 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC19.16■□□□□ 0.66
TPM1P09493 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TPM1P09493 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC19.16■□□□□ 0.66
TPM1P09493 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
TPM1P09493 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC19.16■□□□□ 0.66
TPM1P09493 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
TPM1P09493 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TPM1P09493 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC19.16■□□□□ 0.66
TPM1P09493 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
TPM1P09493 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
TPM1P09493 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC19.16■□□□□ 0.66
TPM1P09493 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC19.16■□□□□ 0.66
TPM1P09493 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC19.16■□□□□ 0.66
TPM1P09493 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TPM1P09493 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
TPM1P09493 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TPM1P09493 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC19.16■□□□□ 0.66
TPM1P09493 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC19.16■□□□□ 0.66
TPM1P09493 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC19.16■□□□□ 0.66
TPM1P09493 RPS20-210ENST00000523936 899 ntTSL 2 BASIC19.16■□□□□ 0.66
TPM1P09493 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
TPM1P09493 AL355075.4-201ENST00000554988 638 ntBASIC19.16■□□□□ 0.66
TPM1P09493 AL139327.4-201ENST00000612362 153 ntBASIC19.16■□□□□ 0.66
TPM1P09493 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC19.16■□□□□ 0.66
TPM1P09493 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TPM1P09493 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC19.16■□□□□ 0.66
TPM1P09493 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TPM1P09493 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TPM1P09493 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC19.16■□□□□ 0.66
TPM1P09493 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
TPM1P09493 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TPM1P09493 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC19.16■□□□□ 0.66
TPM1P09493 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC19.16■□□□□ 0.66
TPM1P09493 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
TPM1P09493 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TPM1P09493 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TPM1P09493 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
TPM1P09493 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
TPM1P09493 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC19.15■□□□□ 0.66
TPM1P09493 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
TPM1P09493 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
TPM1P09493 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
TPM1P09493 MST1L-201ENST00000442552 2185 ntBASIC19.15■□□□□ 0.66
TPM1P09493 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
TPM1P09493 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
TPM1P09493 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TPM1P09493 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
TPM1P09493 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC19.15■□□□□ 0.66
TPM1P09493 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
TPM1P09493 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC19.15■□□□□ 0.66
TPM1P09493 DENND3-207ENST00000518347 850 ntTSL 2 BASIC19.15■□□□□ 0.66
TPM1P09493 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
TPM1P09493 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC19.15■□□□□ 0.66
TPM1P09493 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC19.15■□□□□ 0.66
TPM1P09493 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
TPM1P09493 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TPM1P09493 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC19.15■□□□□ 0.66
TPM1P09493 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TPM1P09493 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC19.15■□□□□ 0.66
TPM1P09493 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
TPM1P09493 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC19.15■□□□□ 0.66
TPM1P09493 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TPM1P09493 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
TPM1P09493 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC19.15■□□□□ 0.66
TPM1P09493 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
TPM1P09493 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
TPM1P09493 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
TPM1P09493 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC19.14■□□□□ 0.66
TPM1P09493 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC19.14■□□□□ 0.66
TPM1P09493 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC19.14■□□□□ 0.66
TPM1P09493 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
TPM1P09493 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
TPM1P09493 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
TPM1P09493 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
TPM1P09493 DDT-203ENST00000403754 569 ntTSL 3 BASIC19.14■□□□□ 0.65
TPM1P09493 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC19.14■□□□□ 0.65
TPM1P09493 ECEL1P3-201ENST00000427961 737 ntBASIC19.14■□□□□ 0.65
TPM1P09493 DDT-206ENST00000430101 573 ntTSL 2 BASIC19.14■□□□□ 0.65
TPM1P09493 ECEL1P2-202ENST00000465689 757 ntBASIC19.14■□□□□ 0.65
TPM1P09493 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
TPM1P09493 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC19.14■□□□□ 0.65
TPM1P09493 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
TPM1P09493 FAM87A-204ENST00000613235 858 ntBASIC19.14■□□□□ 0.65
TPM1P09493 GXYLT1P4-201ENST00000613576 1192 ntBASIC19.14■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 47.6 ms