Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
HOXC4P09017 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
HOXC4P09017 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
HOXC4P09017 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
HOXC4P09017 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
HOXC4P09017 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
HOXC4P09017 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
HOXC4P09017 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
HOXC4P09017 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.28
HOXC4P09017 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
HOXC4P09017 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC16.83■□□□□ 0.28
HOXC4P09017 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC16.83■□□□□ 0.28
HOXC4P09017 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC16.83■□□□□ 0.28
HOXC4P09017 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
HOXC4P09017 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
HOXC4P09017 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC16.83■□□□□ 0.28
HOXC4P09017 AC107918.2-201ENST00000530817 355 ntBASIC16.83■□□□□ 0.28
HOXC4P09017 REM2-202ENST00000536884 1331 ntTSL 2 BASIC16.83■□□□□ 0.28
HOXC4P09017 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC16.83■□□□□ 0.28
HOXC4P09017 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC16.83■□□□□ 0.28
HOXC4P09017 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC16.83■□□□□ 0.28
HOXC4P09017 AC093525.9-201ENST00000624961 1746 ntBASIC16.83■□□□□ 0.28
HOXC4P09017 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
HOXC4P09017 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
HOXC4P09017 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC16.82■□□□□ 0.28
HOXC4P09017 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
HOXC4P09017 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
HOXC4P09017 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HOXC4P09017 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC16.82■□□□□ 0.28
HOXC4P09017 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HOXC4P09017 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC16.82■□□□□ 0.28
HOXC4P09017 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HOXC4P09017 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
HOXC4P09017 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
HOXC4P09017 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HOXC4P09017 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HOXC4P09017 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC16.82■□□□□ 0.28
HOXC4P09017 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC16.82■□□□□ 0.28
HOXC4P09017 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC16.82■□□□□ 0.28
HOXC4P09017 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC16.82■□□□□ 0.28
HOXC4P09017 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
HOXC4P09017 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC16.82■□□□□ 0.28
HOXC4P09017 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC16.82■□□□□ 0.28
HOXC4P09017 MED16-214ENST00000617672 554 ntTSL 5 BASIC16.82■□□□□ 0.28
HOXC4P09017 AL645728.2-201ENST00000641974 660 ntBASIC16.82■□□□□ 0.28
HOXC4P09017 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HOXC4P09017 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HOXC4P09017 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HOXC4P09017 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC16.82■□□□□ 0.28
HOXC4P09017 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC16.82■□□□□ 0.28
HOXC4P09017 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
HOXC4P09017 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC16.82■□□□□ 0.28
HOXC4P09017 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
HOXC4P09017 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
HOXC4P09017 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
HOXC4P09017 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC16.81■□□□□ 0.28
HOXC4P09017 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC16.81■□□□□ 0.28
HOXC4P09017 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC16.81■□□□□ 0.28
HOXC4P09017 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
HOXC4P09017 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC16.81■□□□□ 0.28
HOXC4P09017 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HOXC4P09017 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC16.81■□□□□ 0.28
HOXC4P09017 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HOXC4P09017 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC16.81■□□□□ 0.28
HOXC4P09017 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
HOXC4P09017 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC16.81■□□□□ 0.28
HOXC4P09017 HTR5BP-201ENST00000430851 1154 ntBASIC16.81■□□□□ 0.28
HOXC4P09017 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC16.81■□□□□ 0.28
HOXC4P09017 ACTG1P14-201ENST00000446382 1122 ntBASIC16.81■□□□□ 0.28
HOXC4P09017 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC16.81■□□□□ 0.28
HOXC4P09017 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
HOXC4P09017 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC16.81■□□□□ 0.28
HOXC4P09017 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
HOXC4P09017 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC16.81■□□□□ 0.28
HOXC4P09017 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC16.81■□□□□ 0.28
HOXC4P09017 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
HOXC4P09017 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC16.81■□□□□ 0.28
HOXC4P09017 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC16.81■□□□□ 0.28
HOXC4P09017 AC079781.4-201ENST00000641908 219 ntBASIC16.81■□□□□ 0.28
HOXC4P09017 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
HOXC4P09017 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC16.81■□□□□ 0.28
HOXC4P09017 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
HOXC4P09017 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC16.81■□□□□ 0.28
HOXC4P09017 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC16.81■□□□□ 0.28
HOXC4P09017 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC16.81■□□□□ 0.28
HOXC4P09017 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HOXC4P09017 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
HOXC4P09017 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC16.81■□□□□ 0.28
HOXC4P09017 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC16.8■□□□□ 0.28
HOXC4P09017 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC16.8■□□□□ 0.28
HOXC4P09017 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
HOXC4P09017 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC16.8■□□□□ 0.28
HOXC4P09017 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
HOXC4P09017 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC16.8■□□□□ 0.28
HOXC4P09017 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HOXC4P09017 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
HOXC4P09017 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC16.8■□□□□ 0.28
HOXC4P09017 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC16.8■□□□□ 0.28
HOXC4P09017 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HOXC4P09017 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms