Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
MSH4O15457 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
MSH4O15457 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
MSH4O15457 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
MSH4O15457 AC093525.9-201ENST00000624961 1746 ntBASIC19.45■□□□□ 0.7
MSH4O15457 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
MSH4O15457 AC139713.2-201ENST00000641328 2723 ntBASIC19.45■□□□□ 0.7
MSH4O15457 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC19.44■□□□□ 0.7
MSH4O15457 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
MSH4O15457 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
MSH4O15457 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
MSH4O15457 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
MSH4O15457 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC19.44■□□□□ 0.7
MSH4O15457 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC19.44■□□□□ 0.7
MSH4O15457 AP002414.1-201ENST00000391405 1147 ntBASIC19.44■□□□□ 0.7
MSH4O15457 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC19.44■□□□□ 0.7
MSH4O15457 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
MSH4O15457 TERC-201ENST00000602385 541 ntBASIC19.44■□□□□ 0.7
MSH4O15457 AL671883.3-201ENST00000603274 991 ntBASIC19.44■□□□□ 0.7
MSH4O15457 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
MSH4O15457 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
MSH4O15457 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
MSH4O15457 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
MSH4O15457 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
MSH4O15457 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC19.44■□□□□ 0.7
MSH4O15457 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
MSH4O15457 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
MSH4O15457 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
MSH4O15457 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC19.43■□□□□ 0.7
MSH4O15457 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC19.43■□□□□ 0.7
MSH4O15457 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
MSH4O15457 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC19.43■□□□□ 0.7
MSH4O15457 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
MSH4O15457 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
MSH4O15457 NABP1-203ENST00000409510 843 ntTSL 5 BASIC19.43■□□□□ 0.7
MSH4O15457 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
MSH4O15457 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
MSH4O15457 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC19.43■□□□□ 0.7
MSH4O15457 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC19.43■□□□□ 0.7
MSH4O15457 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC19.43■□□□□ 0.7
MSH4O15457 AC108751.1-201ENST00000490852 363 ntBASIC19.43■□□□□ 0.7
MSH4O15457 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
MSH4O15457 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC19.43■□□□□ 0.7
MSH4O15457 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC19.43■□□□□ 0.7
MSH4O15457 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC19.43■□□□□ 0.7
MSH4O15457 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
MSH4O15457 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
MSH4O15457 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
MSH4O15457 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
MSH4O15457 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC19.43■□□□□ 0.7
MSH4O15457 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
MSH4O15457 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
MSH4O15457 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
MSH4O15457 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
MSH4O15457 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
MSH4O15457 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
MSH4O15457 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
MSH4O15457 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
MSH4O15457 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
MSH4O15457 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
MSH4O15457 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
MSH4O15457 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
MSH4O15457 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
MSH4O15457 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
MSH4O15457 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
MSH4O15457 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
MSH4O15457 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
MSH4O15457 AC108073.2-201ENST00000464002 357 ntBASIC19.42■□□□□ 0.7
MSH4O15457 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC19.42■□□□□ 0.7
MSH4O15457 CIPC-205ENST00000555437 566 ntTSL 3 BASIC19.42■□□□□ 0.7
MSH4O15457 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
MSH4O15457 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC19.42■□□□□ 0.7
MSH4O15457 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
MSH4O15457 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC19.42■□□□□ 0.7
MSH4O15457 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
MSH4O15457 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
MSH4O15457 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
MSH4O15457 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC19.42■□□□□ 0.7
MSH4O15457 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC19.42■□□□□ 0.7
MSH4O15457 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC19.42■□□□□ 0.7
MSH4O15457 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC19.42■□□□□ 0.7
MSH4O15457 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC19.42■□□□□ 0.7
MSH4O15457 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
MSH4O15457 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
MSH4O15457 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
MSH4O15457 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
MSH4O15457 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
MSH4O15457 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
MSH4O15457 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
MSH4O15457 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC19.41■□□□□ 0.7
MSH4O15457 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC19.41■□□□□ 0.7
MSH4O15457 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
MSH4O15457 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
MSH4O15457 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
MSH4O15457 MIR574-201ENST00000385209 96 ntBASIC19.41■□□□□ 0.7
MSH4O15457 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
MSH4O15457 LBH-204ENST00000406087 559 ntTSL 4 BASIC19.41■□□□□ 0.7
MSH4O15457 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC19.41■□□□□ 0.7
MSH4O15457 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
MSH4O15457 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC19.41■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms